Strain identifier
BacDive ID: 131493
Type strain: 
Species: Halomonas heilongjiangensis
Strain Designation: 9-2
Strain history: <- G. Dou, Beijing Forestry Univ., College Biological Scs. and Biotechnol., China; 9-2
NCBI tax ID(s): 1387883 (species)
version 8.1 (current version)
General
@ref: 22720
BacDive-ID: 131493
DSM-Number: 26881
keywords: genome sequence, 16S sequence, Bacteria, motile
description: Halomonas heilongjiangensis 9-2 is a motile bacterium that was isolated from saline and alkaline soil.
NCBI tax id
- NCBI tax id: 1387883
- Matching level: species
strain history
- @ref: 22720
- history: <- G. Dou, Beijing Forestry Univ., College Biological Scs. and Biotechnol., China; 9-2
doi: 10.13145/bacdive131493.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Halomonas
- species: Halomonas heilongjiangensis
- full scientific name: Halomonas heilongjiangensis Dou et al. 2015
@ref: 22720
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Halomonas
species: Halomonas heilongjiangensis
full scientific name: Halomonas heilongjiangensis Dou et al. 2015
strain designation: 9-2
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 92.799 | |
| 69480 | 99.978 | negative |
Culture and growth conditions
culture medium
- @ref: 22720
- name: TRYPTONE SOYA BROTH (TSB) WITH ADDITIONAL SODIUM CHLORIDE (DSMZ Medium 1518)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1518
- composition: Name: TRYPTONE SOYA BROTH (TSB) WITH ADDITIONAL (DSMZ Medium 1518) Composition: NaCl 55.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.978 |
Isolation, sampling and environmental information
isolation
- @ref: 22720
- sample type: saline and alkaline soil
- geographic location: Heilongjiang province, Lindian county
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Alkaline | |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_60041.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_430;97_9805;98_18581;99_60041&stattab=map
- Last taxonomy: Halomonas
- 16S sequence: KF479230
- Sequence Identity:
- Total samples: 1878
- soil counts: 56
- aquatic counts: 316
- animal counts: 1489
- plant counts: 17
Safety information
risk assessment
- @ref: 22720
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22720
- description: Halomonas heilongjiangensis strain 9-2 16S ribosomal RNA gene, partial sequence
- accession: KF479230
- length: 1490
- database: ena
- NCBI tax ID: 1387883
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halomonas heilongjiangensis 9-2 | GCA_003202165 | scaffold | ncbi | 1387883 |
| 66792 | Halomonas heilongjiangensis DSM 26881 | GCA_002879645 | scaffold | ncbi | 1387883 |
| 66792 | Halomonas heilongjiangensis strain DSM 26881 | 1387883.3 | wgs | patric | 1387883 |
| 66792 | Halomonas heilongjiangensis DSM 26881 | 2856135535 | draft | img | 1387883 |
GC content
- @ref: 22720
- GC-content: 69.7
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | yes | 73.149 | no |
| gram-positive | no | 98.407 | no |
| anaerobic | no | 98.327 | no |
| halophile | yes | 88.387 | no |
| spore-forming | no | 96.128 | no |
| thermophile | no | 99.186 | no |
| glucose-util | yes | 92.096 | no |
| aerobic | yes | 87.946 | no |
| motile | yes | 90.417 | no |
| glucose-ferment | no | 72.9 | no |
External links
@ref: 22720
culture collection no.: DSM 26881, CGMCC 1.12467
straininfo link
- @ref: 89910
- straininfo: 400941
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26036672 | Halomonas heilongjiangensis sp. nov., a novel moderately halophilic bacterium isolated from saline and alkaline soil. | Dou G, He W, Liu H, Ma Y | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0493-4 | 2015 | Aerobiosis, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Halomonas/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature | Genetics |
| Phylogeny | 29561252 | Halomonas endophytica sp. nov., isolated from liquid in the stems of Populus euphratica. | Chen C, Anwar N, Wu C, Fu G, Wang R, Zhang C, Wu Y, Sun C, Wu M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002585 | 2018 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Halomonas/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Stems/microbiology, Populus/*microbiology, Quinones/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22720 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26881 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26881) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 89910 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400941.1 |