Strain identifier
BacDive ID: 131481
Type strain: 
Species: Peptoanaerobacter stomatis
Strain Designation: HM-765, OBRC8
Strain history: <- M. Sizova, Northeastern Univ., Boston, USA; OBRC8
NCBI tax ID(s): 796937 (species)
version 9 (current version)
General
@ref: 22708
BacDive-ID: 131481
DSM-Number: 28706
keywords: genome sequence, 16S sequence, Bacteria, anaerobe
description: Peptoanaerobacter stomatis HM-765 is an anaerobe bacterium that was isolated from healthy human, subgingival dental plaque.
NCBI tax id
- NCBI tax id: 796937
- Matching level: species
strain history
- @ref: 22708
- history: <- M. Sizova, Northeastern Univ., Boston, USA; OBRC8
doi: 10.13145/bacdive131481.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptostreptococcaceae
- genus: Peptoanaerobacter
- species: Peptoanaerobacter stomatis
- full scientific name: Peptoanaerobacter stomatis Sizova et al. 2016
@ref: 22708
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Peptostreptococcaceae
genus: Peptoanaerobacter
species: Peptoanaerobacter stomatis
full scientific name: Peptoanaerobacter stomatis Sizova et al. 2016
strain designation: HM-765, OBRC8
type strain: no
Culture and growth conditions
culture medium
- @ref: 22708
- name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104
- composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
culture temp
- @ref: 22708
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 22708
- oxygen tolerance: anaerobe
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68380 | 16199 | urea | + | hydrolysis |
| 68380 | 16024 | D-mannose | - | fermentation |
| 68380 | 16634 | raffinose | - | fermentation |
| 68380 | 29985 | L-glutamate | - | degradation |
| 68380 | 17632 | nitrate | - | reduction |
| 68380 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68380 | serine arylamidase | - | |
| 68380 | glutamyl-glutamate arylamidase | - | |
| 68380 | histidine arylamidase | - | |
| 68380 | glycin arylamidase | - | |
| 68380 | alanine arylamidase | - | 3.4.11.2 |
| 68380 | tyrosine arylamidase | - | |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68380 | leucine arylamidase | - | 3.4.11.1 |
| 68380 | phenylalanine arylamidase | - | |
| 68380 | leucyl glycin arylamidase | + | 3.4.11.1 |
| 68380 | proline-arylamidase | - | 3.4.11.5 |
| 68380 | alkaline phosphatase | + | 3.1.3.1 |
| 68380 | tryptophan deaminase | - | 4.1.99.1 |
| 68380 | alpha-fucosidase | - | 3.2.1.51 |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68380 | beta-glucuronidase | - | 3.2.1.31 |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 |
| 68380 | beta-glucosidase | - | 3.2.1.21 |
| 68380 | alpha-glucosidase | - | 3.2.1.20 |
| 68380 | beta-Galactosidase 6-phosphate | - | |
| 68380 | beta-galactosidase | - | 3.2.1.23 |
| 68380 | alpha-galactosidase | - | 3.2.1.22 |
| 68380 | urease | + | 3.5.1.5 |
API rID32A
| @ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22708 | + | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | +/- | - | + | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 22708
- sample type: healthy human, subgingival dental plaque
- geographic location: MA, Boston
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Subgingival plaque |
| #Host Body-Site | #Oral cavity and airways | #Tooth |
taxonmaps
- @ref: 69479
- File name: preview.99_6513.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_345;96_3085;97_3785;98_4807;99_6513&stattab=map
- Last taxonomy: Peptoanaerobacter stomatis subclade
- 16S sequence: HM120217
- Sequence Identity:
- Total samples: 5612
- soil counts: 69
- aquatic counts: 70
- animal counts: 5448
- plant counts: 25
Safety information
risk assessment
- @ref: 22708
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22708
- description: Peptostreptococcaceae bacterium OBRC8 16S ribosomal RNA gene, partial sequence
- accession: HM120217
- length: 1395
- database: nuccore
- NCBI tax ID: 796937
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Peptoanaerobacter stomatis OBRC8 | GCA_000293035 | contig | ncbi | 796937 |
| 66792 | Peptoanaerobacter stomatis OBRC8 | 2531839269 | draft | img | 796937 |
GC content
- @ref: 22708
- GC-content: 32.68
External links
@ref: 22708
culture collection no.: DSM 28706
straininfo link
- @ref: 89898
- straininfo: 408226
literature
- topic: Genetics
- Pubmed-ID: 26221418
- title: High-quality draft genome sequences of five anaerobic oral bacteria and description of Peptoanaerobacter stomatis gen. nov., sp. nov., a new member of the family Peptostreptococcaceae.
- authors: Sizova MV, Chilaka A, Earl AM, Doerfert SN, Muller PA, Torralba M, McCorrison JM, Durkin AS, Nelson KE, Epstein SS
- journal: Stand Genomic Sci
- DOI: 10.1186/s40793-015-0027-8
- year: 2015
- topic2: Phylogeny
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22708 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28706 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28706) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 68380 | Automatically annotated from API rID32A | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 89898 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408226.1 |