Strain identifier

BacDive ID: 131441

Type strain: Yes

Species: Aeromonas lacus

Strain Designation: AE122

Strain history: <- M. J. Figueras, Departament de Ciencies Mediques Basiques, Universitat de Rovira i Virgili; AE122 <- R. Beaz Hidalgo, Universitat de Rovira i Virgili <- K. Berg, Univ. Helsinki, Finland

NCBI tax ID(s): 558884 (species)

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General

@ref: 22668

BacDive-ID: 131441

DSM-Number: 100829

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Aeromonas lacus AE122 is a mesophilic bacterium that was isolated from small humic lake with elevated nitrogen levels in water.

NCBI tax id

  • NCBI tax id: 558884
  • Matching level: species

strain history

  • @ref: 22668
  • history: <- M. J. Figueras, Departament de Ciencies Mediques Basiques, Universitat de Rovira i Virgili; AE122 <- R. Beaz Hidalgo, Universitat de Rovira i Virgili <- K. Berg, Univ. Helsinki, Finland

doi: 10.13145/bacdive131441.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas lacus
  • full scientific name: Aeromonas lacus Beaz-Hidalgo et al. 2015

@ref: 22668

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas lacus

full scientific name: Aeromonas lacus Beaz-Hidalgo et al. 2015

strain designation: AE122

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 22668
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 22668
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
22668+++-+----++++-------+

Isolation, sampling and environmental information

isolation

  • @ref: 22668
  • sample type: small humic lake with elevated nitrogen levels in water
  • geographic location: Pyhtää (municipality), Huutjärvi
  • country: Finland
  • origin.country: FIN
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Condition#Acidic

taxonmaps

  • @ref: 69479
  • File name: preview.99_537.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_537&stattab=map
  • Last taxonomy: Aeromonas
  • 16S sequence: HG970953
  • Sequence Identity:
  • Total samples: 1750
  • soil counts: 68
  • aquatic counts: 1144
  • animal counts: 488
  • plant counts: 50

Safety information

risk assessment

  • @ref: 22668
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22668
  • description: Aeromonas lacus partial 16S rRNA gene, type strain AE122T
  • accession: HG970953
  • length: 1405
  • database: ena
  • NCBI tax ID: 558884

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas lacus AE122GCA_000764665contigncbi558884
66792Aeromonas lacus AE1222876709903draftimg558884

External links

@ref: 22668

culture collection no.: DSM 100829, CECT 8024, LMG 26710

straininfo link

  • @ref: 89866
  • straininfo: 378317

literature

  • topic: Phylogeny
  • Pubmed-ID: 25852023
  • title: Aeromonas aquatica sp. nov., Aeromonas finlandiensis sp. nov. and Aeromonas lacus sp. nov. isolated from Finnish waters associated with cyanobacterial blooms.
  • authors: Beaz-Hidalgo R, Latif-Eugenin F, Hossain MJ, Berg K, Niemi RM, Rapala J, Lyra C, Liles MR, Figueras MJ
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2015.02.005
  • year: 2015
  • mesh: Aeromonas/*classification/*isolation & purification, Cluster Analysis, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases, Finland, Genes, Bacterial/genetics, Lakes/*microbiology, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22668Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100829Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100829)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89866Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID378317.1