Strain identifier
BacDive ID: 131422
Type strain: 
Species: Paenibacillus rhizoryzae
Strain Designation: 1ZS3-5
Strain history: <- L. Zhang, Agricultural Cultural Culture Collection, China; 1ZS3-5
NCBI tax ID(s): 1604721 (species)
version 8.1 (current version)
General
@ref: 22649
BacDive-ID: 131422
DSM-Number: 29322
keywords: 16S sequence, Bacteria, mesophilic
description: Paenibacillus rhizoryzae 1ZS3-5 is a mesophilic bacterium that was isolated from rice rhizosphere soil.
NCBI tax id
- NCBI tax id: 1604721
- Matching level: species
strain history
- @ref: 22649
- history: <- L. Zhang, Agricultural Cultural Culture Collection, China; 1ZS3-5
doi: 10.13145/bacdive131422.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus rhizoryzae
- full scientific name: Paenibacillus rhizoryzae Zhang et al. 2015
@ref: 22649
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus rhizoryzae
full scientific name: Paenibacillus rhizoryzae Zhang et al. 2015
strain designation: 1ZS3-5
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22649
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 22649
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22649
- sample type: rice rhizosphere soil
- geographic location: Hunan Province, Qiyang County, Key Field Monitoring Experimental Station for Red Soil Ecoenvironment of Ministry of Agriculture
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_103764.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_11793;97_53511;98_70710;99_103764&stattab=map
- Last taxonomy: Paenibacillus rhizoryzae subclade
- 16S sequence: KP675984
- Sequence Identity:
- Total samples: 340
- soil counts: 295
- aquatic counts: 18
- animal counts: 19
- plant counts: 8
Safety information
risk assessment
- @ref: 22649
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22649
- description: Paenibacillus rhizoryzae strain 1ZS3-5 16S ribosomal RNA gene, partial sequence
- accession: KP675984
- length: 1509
- database: ena
- NCBI tax ID: 1604721
GC content
- @ref: 22649
- GC-content: 47.5
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 22649
culture collection no.: DSM 29322, ACCC 19782
straininfo link
- @ref: 89850
- straininfo: 406161
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26065736 | Paenibacillus rhizoryzae sp. nov., isolated from rice rhizosphere. | Zhang L, Gao JS, Zhang S, Ali Sheirdil R, Wang XC, Zhang XX | Int J Syst Evol Microbiol | 10.1099/ijs.0.000376 | 2015 | Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization/genetics, Oryza, *Paenibacillus/classification/isolation & purification, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology | Genetics |
| Phylogeny | 30307388 | Paenibacillus montanisoli sp. nov., isolated from mountain area soil. | Wu M, Zong Y, Guo W, Wang G, Li M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003036 | 2018 | Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genes, Bacterial, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22649 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29322 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29322) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89850 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406161.1 |