Strain identifier
BacDive ID: 131414
Type strain: 
Species: Zhihengliuella somnathii
Strain Designation: JG 03
Strain history: DSM 23187 <-- B. Jha; Central Salt & Mar. Chem. Res. Inst., Bhavnagar, India; JG 03.
NCBI tax ID(s): 556291 (species)
General
@ref: 22641
BacDive-ID: 131414
DSM-Number: 23187
keywords: 16S sequence, Bacteria, mesophilic
description: Zhihengliuella somnathii JG 03 is a mesophilic bacterium that was isolated from roots of Salicornia brachiata.
NCBI tax id
- NCBI tax id: 556291
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22641 | <- B. Jha, Central Salt and Marine Chemicals Res. Inst., Bhavnagar, India; JG 03 <- I. Gontia |
| 67770 | DSM 23187 <-- B. Jha; Central Salt & Mar. Chem. Res. Inst., Bhavnagar, India; JG 03. |
doi: 10.13145/bacdive131414.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Zhihengliuella
- species: Zhihengliuella somnathii
- full scientific name: Zhihengliuella somnathii Jha et al. 2015
@ref: 22641
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Zhihengliuella
species: Zhihengliuella somnathii
full scientific name: Zhihengliuella somnathii Jha et al. 2015
strain designation: JG 03
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-10, MK-9
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|---|
| 22641 | roots of Salicornia brachiata | Salicornia brachiata | west coast, Gujarat (21° 45' N 72° 14' E) | India | IND | Asia | 21.75 | 72.2333 |
| 67770 | Roots of an extreme halophyte Salicornia brachiata from the coastal region of Bhavnagar district | Salicornia brachiata | Gujarat | India | IND | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Aquatic plant |
| #Host Body-Site | #Plant | #Root (Rhizome) |
taxonmaps
- @ref: 69479
- File name: preview.99_152037.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_158;97_13038;98_16043;99_152037&stattab=map
- Last taxonomy: Zhihengliuella somnathii
- 16S sequence: EU937748
- Sequence Identity:
- Total samples: 13
- soil counts: 6
- animal counts: 7
Sequence information
16S sequences
- @ref: 67770
- description: Zhihengliuella somnathii strain JG 03 16S ribosomal RNA gene, partial sequence
- accession: EU937748
- length: 1488
- database: ena
- NCBI tax ID: 556291
GC content
| @ref | GC-content | method |
|---|---|---|
| 22641 | 70.0 | high performance liquid chromatography (HPLC) |
| 67770 | 70 | high performance liquid chromatography (HPLC) |
External links
@ref: 22641
culture collection no.: DSM 23187, IMCC 253, JCM 31986, KCTC 39767
literature
- topic: Phylogeny
- Pubmed-ID: 26297009
- title: Zhihengliuella somnathii sp. nov., a halotolerant actinobacterium from the rhizosphere of a halophyte Salicornia brachiata.
- authors: Jha B, Kumar Singh V, Weiss A, Hartmann A, Schmid M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000391
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, Chenopodiaceae, DNA, Bacterial/genetics, Fatty Acids/analysis, *Micrococcaceae/classification, Molecular Sequence Data, Nucleic Acid Hybridization/genetics, Peptidoglycan, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Salt-Tolerant Plants, Sequence Analysis, DNA, Sodium Chloride
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22641 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23187 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23187) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |