General

@ref: 22638

BacDive-ID: 131411

DSM-Number: 22771

keywords: 16S sequence, Bacteria, microaerophile, mesophilic

description: Congregibacter sp. NOR5-3 is a microaerophile, mesophilic bacterium that was isolated from oxic layer of sediment.

NCBI tax id

• NCBI tax id: 2744308
• Matching level: species

strain history

• @ref: 22638
• history: <- B. Fuchs, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; Rap1red <- J. Harder and A. Meziti {2005}

doi: 10.13145/bacdive131411.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Gammaproteobacteria
• order: Cellvibrionales
• family: Halieaceae
• genus: Congregibacter
• species: Congregibacter sp.
• full scientific name: Congregibacter Spring et al. 2009

@ref: 22638

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Halieaceae, not assigned to order

family: Halieaceae

genus: Congregibacter

species: Congregibacter sp.

full scientific name: Congregibacter sp.

strain designation: NOR5-3, Rap1red

type strain: no

Morphology

colony morphology

• @ref: 22638
• incubation period: 8-14 days

Culture and growth conditions

culture medium

• @ref: 22638
• name: CONGREGIBACTER (SYPHC) MEDIUM (DSMZ Medium 1115)
• growth: yes
• link: https://mediadive.dsmz.de/medium/1115
• composition: Name: CONGREGIBACTER (SYPHC) MEDIUM (DSMZ Medium 1115) Composition: Sea Salt 34.965 g/l HEPES 2.4975 g/l Na-pyruvate 1.0989 g/l Yeast extract 0.999001 g/l NH4Cl 0.0999001 g/l KH2PO4 0.04995 g/l L-Cysteine HCl x H2O 0.03996 g/l L-Histidine 0.03996 g/l MgSO4 x 7 H2O 0.02997 g/l NaCl 0.00999001 g/l MnSO4 x H2O 0.00499501 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.0027972 g/l CoCl2 x 6 H2O 0.0017982 g/l ZnSO4 x 7 H2O 0.0017982 g/l CaCl2 x 2 H2O 0.000999001 g/l FeSO4 x 7 H2O 0.000999001 g/l AlK(SO4)2 x 12 H2O 0.00017982 g/l Pyridoxine hydrochloride 0.00014985 g/l CuSO4 x 5 H2O 9.99001e-05 g/l H3BO3 9.99001e-05 g/l Nicotinic acid 9.99001e-05 g/l Thiamine-HCl x 2 H2O 9.99001e-05 g/l Na2SeO4 9.99001e-05 g/l Na2WO4 x 2 H2O 9.99001e-05 g/l Na2MoO4 x 2 H2O 9.99001e-05 g/l Calcium pantothenate 4.995e-05 g/l Vitamin B12 4.995e-05 g/l p-Aminobenzoic acid 3.996e-05 g/l D-(+)-biotin 9.99001e-06 g/l Distilled water

culture temp

• @ref: 22638
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Physiology and metabolism

oxygen tolerance

• @ref: 22638
• oxygen tolerance: microaerophile

Isolation, sampling and environmental information

isolation

• @ref: 22638
• sample type: oxic layer of sediment
• geographic location: Sylt
• country: Germany
• origin.country: DEU
• continent: Europe

isolation source categories

• Cat1: #Environmental
• Cat2: #Aquatic
• Cat3: #Sediment

taxonmaps

• @ref: 69479
• File name: preview.99_2256.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_305;96_1216;97_1442;98_1760;99_2256&stattab=map
• Last taxonomy: Halieaceae
• 16S sequence: EU672854
• Sequence Identity:
• Total samples: 7555
• soil counts: 324
• aquatic counts: 6580
• animal counts: 541
• plant counts: 110

Sequence information

16S sequences

• @ref: 22638
• description: Gamma proteobacterium RAp1 red 16S ribosomal RNA gene, partial sequence
• accession: EU672854
• length: 1492
• database: ena
• NCBI tax ID: 526318

GC content

• @ref: 22638
• GC-content: 56.3
• method: sequence analysis

External links

@ref: 22638

culture collection no.: DSM 22771

straininfo link

• @ref: 89841
• straininfo: 397440

Reference