Strain identifier
BacDive ID: 131383
Type strain: 
Species: Wenyingzhuangia heitensis
Strain Designation: H-MN17
Strain history: <- H. Kasai, Kitasato University, School of Marine Biosciences, Japan; H-MN17
NCBI tax ID(s): 1487859 (species)
version 8.1 (current version)
General
@ref: 22610
BacDive-ID: 131383
DSM-Number: 101599
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Wenyingzhuangia heitensis H-MN17 is a mesophilic, Gram-negative bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 1487859
- Matching level: species
strain history
- @ref: 22610
- history: <- H. Kasai, Kitasato University, School of Marine Biosciences, Japan; H-MN17
doi: 10.13145/bacdive131383.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Wenyingzhuangia
- species: Wenyingzhuangia heitensis
- full scientific name: Wenyingzhuangia heitensis Yoon and Kasai 2015
@ref: 22610
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Wenyingzhuangia
species: Wenyingzhuangia heitensis
full scientific name: Wenyingzhuangia heitensis Yoon and Kasai 2015
strain designation: H-MN17
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.993
colony morphology
- @ref: 22610
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 22610
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 22610
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 97 |
| 69480 | no | 99.999 |
Isolation, sampling and environmental information
isolation
- @ref: 22610
- sample type: seawater
- geographic location: Heita Bay, Kamaishi
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_152945.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15888;96_7296;97_16871;98_100931;99_152945&stattab=map
- Last taxonomy: Wenyingzhuangia heitensis subclade
- 16S sequence: AB924513
- Sequence Identity:
- Total samples: 493
- soil counts: 11
- aquatic counts: 453
- animal counts: 19
- plant counts: 10
Safety information
risk assessment
- @ref: 22610
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22610
- description: Wenyingzhuangia heitensis gene for 16S ribosomal RNA, partial sequence, strain: H-MN17
- accession: AB924513
- length: 1415
- database: ena
- NCBI tax ID: 1487859
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Wenyingzhuangia heitensis DSM 101599 | GCA_011762155 | scaffold | ncbi | 1487859 |
| 66792 | Wenyingzhuangia heitensis strain DSM 101599 | 1487859.3 | wgs | patric | 1487859 |
| 66792 | Wenyingzhuangia heitensis DSM 101599 | 2828438346 | draft | img | 1487859 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 97 | no |
| motile | no | 89.46 | no |
| flagellated | no | 92.837 | no |
| gram-positive | no | 97.801 | no |
| anaerobic | no | 99.198 | no |
| aerobic | yes | 75.691 | no |
| halophile | no | 70.397 | no |
| spore-forming | no | 96.228 | no |
| glucose-util | yes | 84.39 | no |
| thermophile | no | 99.452 | yes |
| glucose-ferment | no | 86.086 | no |
External links
@ref: 22610
culture collection no.: DSM 101599, KCTC 42245, NBRC 110601
straininfo link
- @ref: 89820
- straininfo: 406138
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25528340 | Wenyingzhuangia heitensis sp. nov., a new species of the family Flavobacteriaceae within the phylum Bacteroidetes isolated from seawater. | Yoon J, Kasai H | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0360-8 | 2014 | Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Glycolipids/analysis, Japan, Microscopy, Electron, Transmission, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analysis | Genetics |
| Phylogeny | 25896307 | Wenyingzhuangia gracilariae sp. nov., a novel marine bacterium of the phylum Bacteroidetes isolated from the red alga Gracilaria vermiculophylla. | Yoon J, Oku N, Kasai H | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0456-9 | 2015 | Aerobiosis, Aquatic Organisms/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Glycolipids/analysis, Gracilaria/*microbiology, Japan, Microscopy, Electron, Transmission, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysis | Enzymology |
| Phylogeny | 26687462 | Wenyingzhuangia aestuarii sp. nov., A Marine Bacterium of the Family Flavobacteriaceae Isolated from an Estuary. | Yoon J, Kasai H | Curr Microbiol | 10.1007/s00284-015-0965-9 | 2015 | *Aquatic Organisms, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Estuaries, Flavobacteriaceae/chemistry/*classification/genetics/isolation & purification, Japan, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22610 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101599 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101599) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89820 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406138.1 |