Strain identifier
BacDive ID: 131359
Type strain:
Species: Lactococcus hircilactis
Strain Designation: 117, CRA-FLC-117
Strain history: CIP <- 2015, M. Zago, CREA FLC, Lodi, Italy: strain 117
NCBI tax ID(s): 1494462 (species)
General
@ref: 22586
BacDive-ID: 131359
DSM-Number: 28960
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive
description: Lactococcus hircilactis 117 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from goat raw milk.
NCBI tax id
- NCBI tax id: 1494462
- Matching level: species
strain history
@ref | history |
---|---|
22586 | <- M. Zago, CRA-FLC, Centro Ricerca Istituto Sperimentale Lattiero Caseario, Lodi, Italy; CRA-FLC-117 |
67770 | LMG 28352 <-- M. Zago; CRA-FLC, Italy; 117. |
119909 | CIP <- 2015, M. Zago, CREA FLC, Lodi, Italy: strain 117 |
doi: 10.13145/bacdive131359.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Lactococcus
- species: Lactococcus hircilactis
- full scientific name: Lactococcus hircilactis Meucci et al. 2015
@ref: 22586
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Lactococcus
species: Lactococcus hircilactis
full scientific name: Lactococcus hircilactis Meucci et al. 2015
strain designation: 117, CRA-FLC-117
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | motility | cell shape |
---|---|---|---|---|
69480 | positive | 100 | ||
69480 | 96.864 | no | ||
119909 | positive | no | oval-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
22586 | MRS MEDIUM (DSMZ Medium 11) | yes | https://mediadive.dsmz.de/medium/11 | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water |
119909 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
22586 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 22586
- oxygen tolerance: microaerophile
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 99 |
69480 | no | 99.998 |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | + | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | + | builds acid from | 28017 |
68371 | raffinose | + | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | + | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | + | builds acid from | 17057 |
68371 | salicin | + | builds acid from | 17814 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | + | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
22586 | - | - | - | - | - | - | + | - | - | - | + | + | + | + | - | - | - | - | + | - | - | - | + | - | + | +/- | + | + | + | + | + | + | + | - | - | + | + | - | - | + | - | - | - | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
22586 | goat raw milk | Lombardy, Valtellina | Italy | ITA | Europe | |
67770 | Goat milk collected from a goat herd in Valtellina | Italy | ITA | Europe | ||
119909 | Food, Goat, raw milk | Lombardy, Italy | Italy | ITA | Europe | 2001-09-03 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Caprinae (Sheep/Goat) |
#Host Body Product | #Fluids | #Milk |
taxonmaps
- @ref: 69479
- File name: preview.99_179145.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_58;96_66300;97_86080;98_116914;99_179145&stattab=map
- Last taxonomy: Lactococcus hircilactis subclade
- 16S sequence: KJ201026
- Sequence Identity:
- Total samples: 4156
- soil counts: 143
- aquatic counts: 1207
- animal counts: 2523
- plant counts: 283
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
22586 | 1 | Risk group (German classification) |
119909 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 22586
- description: Lactococcus hircilactis strain DSM 28960 16S ribosomal RNA gene, partial sequence
- accession: KJ201026
- length: 1461
- database: ena
- NCBI tax ID: 1494462
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lactococcus hircilactis strain DSM 28960 | 1494462.5 | wgs | patric | 1494462 |
66792 | Lactococcus hircilactis DSM 28960 | 2921897956 | draft | img | 1494462 |
67770 | Lactococcus hircilactis DSM 28960 | GCA_009601015 | scaffold | ncbi | 1494462 |
GC content
@ref | GC-content | method |
---|---|---|
22586 | 46.4 | fluorimetric |
67770 | 46.4 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 99 | no |
motile | no | 94.9 | no |
gram-positive | yes | 94.028 | no |
anaerobic | no | 93.91 | no |
aerobic | no | 98.182 | yes |
halophile | yes | 66.726 | no |
spore-forming | no | 92.688 | no |
thermophile | no | 99.339 | yes |
glucose-util | yes | 91.193 | no |
flagellated | no | 97.149 | no |
glucose-ferment | yes | 88.688 | no |
External links
@ref: 22586
culture collection no.: DSM 28960, LMG 28352, JCM 31964, CIP 110946
literature
- topic: Phylogeny
- Pubmed-ID: 25833154
- title: Lactococcus hircilactis sp. nov. and Lactococcus laudensis sp. nov., isolated from milk.
- authors: Meucci A, Zago M, Rossetti L, Fornasari ME, Bonvini B, Tidona F, Povolo M, Contarini G, Carminati D, Giraffa G
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000225
- year: 2015
- mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, *Goats, Italy, Lactococcus/*classification/genetics/isolation & purification, Milk/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22586 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28960 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28960) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68371 | Automatically annotated from API 50CH acid | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
119909 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110946 | Collection of Institut Pasteur (CIP 110946) |