Archive BacDiveID:10.13145/bacdive131350.20230509.8.1

Strain identifier

BacDive ID: 131350

Type strain:

Species: Caloranaerobacter ferrireducens

Strain Designation: DY22619, MCCC1A06455

Strain history: X. Zeng DY22619.

NCBI tax ID(s): 1323370 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 22577

BacDive-ID: 131350

DSM-Number: 27799

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic

description: Caloranaerobacter ferrireducens DY22619 is an anaerobe, thermophilic bacterium that was isolated from fragments of hydrothermal sulfide deposits, 2901 m depth.

NCBI tax id

NCBI tax id: 1323370
Matching level: species

strain history

@ref	history
22577	<- X. Zeng, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China; DY22619 <- X. Zeng, Key Lab. Marine Biogenetic Resources, Third Institute of Oceanography, Xiamen, China {2012}
67770	X. Zeng DY22619.

doi: 10.13145/bacdive131350.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Caloranaerobacter
species: Caloranaerobacter ferrireducens
full scientific name: Caloranaerobacter ferrireducens Zeng et al. 2015

@ref: 22577

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Caloranaerobacter

species: Caloranaerobacter ferrireducens

full scientific name: Caloranaerobacter ferrireducens Zeng et al. 2015

strain designation: DY22619, MCCC1A06455

type strain: yes

Culture and growth conditions

culture medium

@ref: 22577
name: MARINITOGA MEDIUM (DSMZ Medium 904)
growth: yes
link: https://mediadive.dsmz.de/medium/904
composition: Name: MARINITOGA MEDIUM (DSMZ Medium 904) Composition: Sea Salt 30.0 g/l PIPES 6.0 g/l D-Glucose 2.5 g/l Tryptone 1.0 g/l Yeast extract 1.0 g/l Na2S x 9 H2O 0.5 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
22577	positive	growth	60	thermophilic
67770	positive	growth	60	thermophilic

Physiology and metabolism

oxygen tolerance

@ref: 22577
oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	latitude	longitude
22577	fragments of hydrothermal sulfide deposits, 2901 m depth	East Pacific rise	International waters	-3.0167	-102.1
67770	Hydrothermal sulfide sample

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Condition	#Sulfuric
#Condition	#Thermophilic (>45°C)

taxonmaps

@ref: 69479
File name: preview.99_6810.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_486;96_3212;97_3942;98_5021;99_6810&stattab=map
Last taxonomy: Caloranaerobacter ferrireducens subclade
16S sequence: KC794016
Sequence Identity:
Total samples: 345
soil counts: 17
aquatic counts: 32
animal counts: 295
plant counts: 1

Safety information

risk assessment

@ref: 22577
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 22577
description: Caloranaerobacter ferrireducens strain DY22619 16S ribosomal RNA gene, partial sequence
accession: KC794016
length: 1470
database: ena
NCBI tax ID: 1323370

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Caloranaerobacter ferrireducens DY22619	GCA_001730685	contig	ncbi	1323370
66792	Caloranaerobacter ferrireducens DY22619	2791354916	draft	img	1323370

GC content

@ref: 22577
GC-content: 29
method: high performance liquid chromatography (HPLC)

External links

@ref: 22577

culture collection no.: DSM 27799, JCM 19467, MCCC 1A06455

straininfo link

@ref: 89791
straininfo: 397626

literature

topic: Phylogeny
Pubmed-ID: 25736413
title: Caloranaerobacter ferrireducens sp. nov., an anaerobic, thermophilic, iron (III)-reducing bacterium isolated from deep-sea hydrothermal sulfide deposits.
authors: Zeng X, Zhang Z, Li X, Jebbar M, Alain K, Shao Z
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijs.0.000165
year: 2015
mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ferric Compounds/metabolism, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/genetics/isolation & purification, Hydrothermal Vents/*microbiology, Iron, Molecular Sequence Data, Pacific Ocean, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfides
topic2: Genetics

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
22577	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-27799	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27799)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
89791	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID397626.1