Strain identifier
BacDive ID: 131329
Type strain: 
Species: Aliidiomarina haloalkalitolerans
Strain Designation: AK5
Strain history: P. Anil Kumar AK5.
NCBI tax ID(s): 859059 (species)
version 8.1 (current version)
General
@ref: 22556
BacDive-ID: 131329
DSM-Number: 24939
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Aliidiomarina haloalkalitolerans AK5 is a mesophilic bacterium that was isolated from coastal surface seawater.
NCBI tax id
- NCBI tax id: 859059
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22556 | <- A.K. Pinnaka, MTCC; AK5 |
| 67770 | P. Anil Kumar AK5. |
doi: 10.13145/bacdive131329.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Idiomarinaceae
- genus: Aliidiomarina
- species: Aliidiomarina haloalkalitolerans
- full scientific name: Aliidiomarina haloalkalitolerans Srinivas et al. 2015
@ref: 22556
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Idiomarinaceae
genus: Aliidiomarina
species: Aliidiomarina haloalkalitolerans
full scientific name: Aliidiomarina haloalkalitolerans Srinivas et al. 2015
strain designation: AK5
type strain: yes
Morphology
colony morphology
- @ref: 22556
- incubation period: 1-2 days
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 22556 | coastal surface seawater | Bay of Bengal, near the coast of Visakhapatnam in Andhra Pradesh | India | IND | Asia |
| 67770 | Sea water near Visakhapatnam Coaset | Bay of Bengal | India | IND | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Surface water |
taxonmaps
- @ref: 69479
- File name: preview.99_30337.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_197;96_14856;97_18140;98_22566;99_30337&stattab=map
- Last taxonomy: Aliidiomarina haloalkalitolerans subclade
- 16S sequence: FN995239
- Sequence Identity:
- Total samples: 238
- soil counts: 15
- aquatic counts: 90
- animal counts: 128
- plant counts: 5
Sequence information
16S sequences
- @ref: 22556
- description: Aliidiomarina haloalkalitolerans partial 16S rRNA gene, type strain AK5T
- accession: FN995239
- length: 1423
- database: ena
- NCBI tax ID: 859059
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aliidiomarina haloalkalitolerans AK5 | 2890116811 | draft | img | 859059 |
| 67770 | Aliidiomarina haloalkalitolerans AK5 | GCA_003987315 | contig | ncbi | 859059 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 22556 | 54.7 | |
| 67770 | 54.7 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 22556
culture collection no.: DSM 24939, JCM 17359, MTCC 11064
straininfo link
- @ref: 89770
- straininfo: 377659
literature
- topic: Phylogeny
- Pubmed-ID: 22200781
- title: Aliidiomarina haloalkalitolerans sp. nov., a marine bacterium isolated from coastal surface seawater.
- authors: Srinivas TN, Nupur, Anil Kumar P
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-011-9690-y
- year: 2011
- mesh: Base Composition, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, India, Locomotion, Molecular Sequence Data, Oxidoreductases/metabolism, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22556 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24939 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24939) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 89770 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID377659.1 |