Strain identifier
BacDive ID: 131323
Type strain: 
Species: Mucilaginibacter gotjawali
Strain Designation: SA3-7
Strain history: <- Jung-Sook Lee, KRIBB
NCBI tax ID(s): 1550579 (species)
version 8.1 (current version)
General
@ref: 22550
BacDive-ID: 131323
DSM-Number: 29289
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Mucilaginibacter gotjawali SA3-7 is an aerobe, mesophilic bacterium that was isolated from soil of forest on lava.
NCBI tax id
- NCBI tax id: 1550579
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22550 | <- J. S. Lee, KCTC, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea; SA3-7 |
| 67770 | KCTC 32515 <-- J.-S. Lee; KCTC, KRIBB, South Korea; SA3-7. |
| 67771 | <- Jung-Sook Lee, KRIBB |
doi: 10.13145/bacdive131323.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Mucilaginibacter
- species: Mucilaginibacter gotjawali
- full scientific name: Mucilaginibacter gotjawali Lee et al. 2015
@ref: 22550
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Mucilaginibacter
species: Mucilaginibacter gotjawali
full scientific name: Mucilaginibacter gotjawali Lee et al. 2015
strain designation: SA3-7
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 90.131 | |
| 69480 | 99.98 | negative |
colony morphology
- @ref: 22550
- incubation period: 3-7 days
multimedia
- @ref: 22550
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29289.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 22550
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22550 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.61 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 22550 | soil of forest on lava | Jeju, Gotjawal forest | Republic of Korea | KOR | Asia |
| 67770 | Soil of a lava forest | Gotjawal, Jeju | Republic of Korea | KOR | Asia |
| 67771 | From soil (Habitat Jeju) | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_127051.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_115;96_2529;97_3088;98_85218;99_127051&stattab=map
- Last taxonomy: Mucilaginibacter gotjawali subclade
- 16S sequence: KM588182
- Sequence Identity:
- Total samples: 968
- soil counts: 679
- aquatic counts: 101
- animal counts: 42
- plant counts: 146
Safety information
risk assessment
- @ref: 22550
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22550
- description: Mucilaginibacter gotjawali strain SA3-7 16S ribosomal RNA gene, partial sequence
- accession: KM588182
- length: 1451
- database: ena
- NCBI tax ID: 1550579
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mucilaginibacter gotjawali SA3-7 | GCA_002355435 | complete | ncbi | 1550579 |
| 66792 | Mucilaginibacter gotjawali CECT 8628 | GCA_014191635 | scaffold | ncbi | 1550579 |
| 66792 | Mucilaginibacter gotjawali strain CECT 8628 | 1550579.5 | wgs | patric | 1550579 |
| 66792 | Mucilaginibacter gotjawali SA3-7 | 2775506936 | complete | img | 1550579 |
| 66792 | Mucilaginibacter gotjawali CECT 8628 | 2824259966 | draft | img | 1550579 |
GC content
- @ref: 22550
- GC-content: 43.1
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 96.243 | no |
| gram-positive | no | 96.794 | no |
| anaerobic | no | 98.53 | yes |
| aerobic | yes | 79.954 | yes |
| halophile | no | 96.821 | no |
| spore-forming | no | 91.828 | no |
| glucose-util | yes | 87.295 | no |
| thermophile | no | 98.753 | yes |
| motile | no | 92.517 | no |
| glucose-ferment | no | 89.027 | no |
External links
@ref: 22550
culture collection no.: DSM 29289, CECT 8628, KCTC 32515, JCM 32202
straininfo link
- @ref: 89764
- straininfo: 399496
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25563911 | Mucilaginibacter gotjawali sp. nov., isolated from soil of a lava forest. | Lee KC, Kim KK, Eom MK, Kim JS, Kim DS, Ko SH, Lee JS | Int J Syst Evol Microbiol | 10.1099/ijs.0.000044 | 2015 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 28664515 | Mucilaginibacter hankyongensis sp. nov., isolated from soil of ginseng field Baekdu Mountain. | Liu Q, Siddiqi MZ, Kim MS, Kim SY, Im WT | J Microbiol | 10.1007/s12275-017-7180-2 | 2017 | Bacterial Typing Techniques, Bacteroidetes/*classification/enzymology/genetics/*isolation & purification, Base Composition, DNA, Bacterial/analysis, Fatty Acids/analysis, Genotype, Ginsenosides/metabolism, Lipids/analysis, *Panax/growth & development/metabolism, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, beta-Glucosidase/biosynthesis | Enzymology |
| Phylogeny | 28821948 | Mucilaginibacter ginsenosidivorans sp. nov., Isolated from Soil of Ginseng Field. | Kim MM, Siddiqi MZ, Im WT | Curr Microbiol | 10.1007/s00284-017-1329-4 | 2017 | Aerobiosis, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Panax/growth & development, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, beta-Glucosidase/metabolism | Transcriptome |
| Phylogeny | 30374915 | Mucilaginibacter xinganensis sp. nov., a phenanthrene-degrading bacterium isolated from wetland soil. | Jiang MZ, Qiu ZJ, Zhang GW, Gao SY, You XY, Ma YF | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1194-6 | 2018 | Bacterial Typing Techniques, Bacteroidetes/classification/genetics/*isolation & purification/metabolism, Biodegradation, Environmental, China, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Phenanthrenes/*metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil/chemistry, *Soil Microbiology, Wetlands | Metabolism |
| Phylogeny | 36329315 | Mucilaginibacter Phenanthrenivorans sp. nov., a Novel Phenanthrene Degradation Bacterium Isolated from Wetland Soil. | You XY, Liu JH, Tian H, Ding Y, Bu QY, Zhang KX, Ren GY, Duan X | Curr Microbiol | 10.1007/s00284-022-03085-z | 2022 | RNA, Ribosomal, 16S/genetics, Phylogeny, *Soil, Wetlands, Soil Microbiology, DNA, Bacterial/genetics, Bacterial Typing Techniques, Base Composition, Sequence Analysis, DNA, Fatty Acids/metabolism, *Phenanthrenes, Vitamin K 2 | Metabolism |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22550 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29289 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29289) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89764 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399496.1 |