Strain identifier
BacDive ID: 131320
Type strain: 
Species: Thermogutta terrifontis
Strain Designation: R1
Strain history: <- O. Kovaleva, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; R1 <- O. Kovaleva and M. Miroshnichenko
NCBI tax ID(s): 1331910 (species)
version 8.1 (current version)
General
@ref: 22547
BacDive-ID: 131320
DSM-Number: 26237
keywords: genome sequence, 16S sequence, Bacteria, thermophilic, motile
description: Thermogutta terrifontis R1 is a thermophilic, motile bacterium that was isolated from microbial mat and water from a terrestrial hot spring.
NCBI tax id
- NCBI tax id: 1331910
- Matching level: species
strain history
- @ref: 22547
- history: <- O. Kovaleva, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; R1 <- O. Kovaleva and M. Miroshnichenko
doi: 10.13145/bacdive131320.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/planctomycetota
- domain: Bacteria
- phylum: Planctomycetota
- class: Planctomycetia
- order: Pirellulales
- family: Thermoguttaceae
- genus: Thermogutta
- species: Thermogutta terrifontis
- full scientific name: Thermogutta terrifontis Slobodkina et al. 2015
@ref: 22547
domain: Bacteria
phylum: Planctomycetes
class: Planctomycetia
order: Planctomycetales
family: Thermoguttaceae
genus: Thermogutta
species: Thermogutta terrifontis
full scientific name: Thermogutta terrifontis Slobodkina et al. 2015
strain designation: R1
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 91.015 | |
| 69480 | 99.999 | negative |
Culture and growth conditions
culture medium
- @ref: 22547
- name: PLANCTOMYCETACEAE MEDIUM (DSMZ Medium 1473)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1473
- composition: Name: PLANTOMYCETACEAE MEDIUM (DSMZ Medium 1473) Composition: Glucose 2.0 g/l KNO3 1.0 g/l KCl 0.33 g/l KH2PO4 0.33 g/l NH4Cl 0.33 g/l MgCl2 0.33 g/l CaCl2 0.33 g/l Yeast extract 0.05 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.000784 g/l NiCl2 x 2 H2O 0.000284 g/l ZnSO4 x 7 H2O 0.000144 g/l MnCl2 x 4 H2O 9.9e-05 g/l Na2SeO4 9.5e-05 g/l CoCl2 x 6 H2O 3.8e-05 g/l Na2WO4 x 2 H2O 3.3e-05 g/l Na2MoO4 x 2 H2O 2.4e-05 g/l Pyridoxine hydrochloride 1e-05 g/l H3BO3 6e-06 g/l p-Aminobenzoic acid 5e-06 g/l Calcium D-(+)-pantothenate 5e-06 g/l Nicotinic acid 5e-06 g/l Riboflavin 5e-06 g/l Thiamine HCl 5e-06 g/l (DL)-alpha-Lipoic acid 5e-06 g/l Folic acid 2e-06 g/l Biotin 2e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Vitamin B12 1e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 22547 | positive | growth | 55-65 | thermophilic | |
| 69480 | thermophilic | 98.709 |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.992
Isolation, sampling and environmental information
isolation
- @ref: 22547
- sample type: microbial mat and water from a terrestrial hot spring
- geographic location: Kurils, Kunashir Island
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Environmental | #Microbial community | #Microbial mat |
| #Environmental | #Terrestrial | |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_99327.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3731;96_29294;97_36929;98_67948;99_99327&stattab=map
- Last taxonomy: Thermogutta terrifontis subclade
- 16S sequence: KC867694
- Sequence Identity:
- Total samples: 291
- soil counts: 155
- aquatic counts: 106
- animal counts: 26
- plant counts: 4
Safety information
risk assessment
- @ref: 22547
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22547
- description: Thermogutta terrifontis strain R1 16S ribosomal RNA gene, partial sequence
- accession: KC867694
- length: 1483
- database: ena
- NCBI tax ID: 1331910
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermogutta terrifontis R1 | GCA_002277955 | complete | ncbi | 1331910 |
| 66792 | Thermogutta terrifontis R1 | 2757320777 | complete | img | 1331910 |
GC content
- @ref: 22547
- GC-content: 57.3
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 70 | no |
| flagellated | no | 85.368 | no |
| gram-positive | no | 98.886 | no |
| anaerobic | yes | 55.225 | no |
| aerobic | no | 80.831 | no |
| halophile | no | 85.704 | no |
| spore-forming | no | 94.308 | no |
| glucose-util | yes | 83.661 | no |
| thermophile | yes | 99.403 | yes |
| glucose-ferment | no | 78.103 | no |
| motile | yes | 84.757 | no |
External links
@ref: 22547
culture collection no.: DSM 26237, VKM B-2805
straininfo link
- @ref: 89761
- straininfo: 400961
literature
- topic: Phylogeny
- Pubmed-ID: 25479950
- title: Thermogutta terrifontis gen. nov., sp. nov. and Thermogutta hypogea sp. nov., thermophilic anaerobic representatives of the phylum Planctomycetes.
- authors: Slobodkina GB, Kovaleva OL, Miroshnichenko ML, Slobodkin AI, Kolganova TV, Novikov AA, van Heerden E, Bonch-Osmolovskaya EA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000009
- year: 2014
- mesh: Bacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Mining, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, South Africa, Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22547 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26237 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26237) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 89761 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400961.1 |