Strain identifier
BacDive ID: 131315
Type strain: 
Species: Rhizobium alvei
Strain Designation: TNR-22
Strain history: <- KCTC <- W.-M. Chen, National Kaohsiung Marine University; Taiwan, ROC
NCBI tax ID(s): 1132659 (species)
version 8.1 (current version)
General
@ref: 22542
BacDive-ID: 131315
DSM-Number: 100976
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Rhizobium alvei TNR-22 is a mesophilic bacterium that was isolated from freshwater.
NCBI tax id
- NCBI tax id: 1132659
- Matching level: species
strain history
- @ref: 22542
- history: <- KCTC <- W.-M. Chen, National Kaohsiung Marine University; Taiwan, ROC
doi: 10.13145/bacdive131315.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium alvei
- full scientific name: Rhizobium alvei Sheu et al. 2015
@ref: 22542
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium alvei
full scientific name: Rhizobium alvei Sheu et al. 2015
strain designation: TNR-22
type strain: yes
Morphology
colony morphology
- @ref: 22542
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 22542
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 22542
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 22542 | catalase | + | 1.11.1.6 |
| 22542 | cytochrome-c oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 22542
- sample type: freshwater
- geographic location: Maolin River, Kaohsiung County, Taiwan
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Freshwater
Safety information
risk assessment
- @ref: 22542
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22542
- description: Rhizobium alvei partial 16S rRNA gene, type strain TNR-22T
- accession: HE649224
- length: 1402
- database: ena
- NCBI tax ID: 1132659
Genome sequences
- @ref: 66792
- description: Rhizobium alvei DSM 100976
- accession: 2928595623
- assembly level: draft
- database: img
- NCBI tax ID: 1132659
GC content
- @ref: 22542
- GC-content: 60.3
External links
@ref: 22542
culture collection no.: DSM 100976, BCRC 80408, KCTC 23919, LMG 26895
straininfo link
- @ref: 89756
- straininfo: 379392
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25385988 | Rhizobium alvei sp. nov., isolated from a freshwater river. | Sheu SY, Huang HW, Young CC, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijs.0.065706-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/isolation & purification, Rivers/*microbiology, Sequence Analysis, DNA, Taiwan | Genetics |
| Phylogeny | 35435479 | Rhizobium setariae sp. nov., an Indole-3-Acetic Acid-Producing Bacterium Isolated from Green Foxtail, Setaria viridis. | Kang M, Seo T | Curr Microbiol | 10.1007/s00284-022-02860-2 | 2022 | Bacterial Typing Techniques, DNA, Bacterial/genetics, Indoleacetic Acids, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizobium, Sequence Analysis, DNA, *Setaria Plant/genetics | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22542 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100976 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100976) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89756 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID379392.1 |