Strain identifier

BacDive ID: 131167

Type strain: No

Species: Bacteroides xylanisolvens

Strain Designation: JJM0207_12

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany <- J.F. Baines, Max Planck Institute for Evolutionary Biology, Plön, Germany; JJM0207_12

NCBI tax ID(s): 371601 (species)

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General

@ref: 22459

BacDive-ID: 131167

DSM-Number: 100015

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, rod-shaped

description: Bacteroides xylanisolvens JJM0207_12 is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from wild mouse.

NCBI tax id

  • NCBI tax id: 371601
  • Matching level: species

strain history

  • @ref: 22459
  • history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany <- J.F. Baines, Max Planck Institute for Evolutionary Biology, Plön, Germany; JJM0207_12

doi: 10.13145/bacdive131167.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Bacteroidaceae
  • genus: Bacteroides
  • species: Bacteroides xylanisolvens
  • full scientific name: Bacteroides xylanisolvens Chassard et al. 2008

@ref: 22459

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Bacteroidaceae

genus: Bacteroides

species: Bacteroides xylanisolvens

full scientific name: Bacteroides xylanisolvens Chassard et al. 2008

strain designation: JJM0207_12

type strain: no

Morphology

cell morphology

  • @ref: 68367
  • cell shape: rod-shaped

colony morphology

  • @ref: 22459
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22459FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)yeshttps://mediadive.dsmz.de/medium/1203Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water
22459WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 22459
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 22459
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose+builds acid from
6836762345L-rhamnose+builds acid from
6836730911sorbitol+builds acid from
6836716634raffinose+builds acid from
683676731melezitose+builds acid from
6836716024D-mannose+builds acid from
6836717057cellobiose+builds acid from
683674853esculin+hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose+builds acid from
6836765327D-xylose+builds acid from
6836717814salicin+builds acid from
6836717306maltose+builds acid from
6836717992sucrose+builds acid from
6836717716lactose+builds acid from
6836716899D-mannitol+builds acid from
6836717634D-glucose+builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838029985L-glutamate+degradation
6838017632nitrate-reduction

metabolite production

  • @ref: 68367
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68367
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380glutamate decarboxylase+4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68367beta-glucosidase+3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRECOCC
22459--++++++++-++/-+++++++-

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
22459--++-+++-+++++/--+/-+--+----+--+-
22459--++-+++/--++++--++--+----+--+/--
22459--++-+++/--++/-+/-+--++--+----+--+/--

Isolation, sampling and environmental information

isolation

  • @ref: 22459
  • sample type: wild mouse
  • geographic location: Plön
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Muridae (Mouse/Rat)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1462.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_21;96_684;97_978;98_1153;99_1462&stattab=map
  • Last taxonomy: Bacteroides xylanisolvens
  • 16S sequence: KR364742
  • Sequence Identity:
  • Total samples: 219481
  • soil counts: 1755
  • aquatic counts: 4947
  • animal counts: 212224
  • plant counts: 555

Safety information

risk assessment

  • @ref: 22459
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22459
  • description: Bacteroides sp. JJM0207-12 16S ribosomal RNA gene, partial sequence
  • accession: KR364742
  • length: 1467
  • database: ena
  • NCBI tax ID: 1796614

External links

@ref: 22459

culture collection no.: DSM 100015

straininfo link

  • @ref: 89612
  • straininfo: 398994

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22459Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100015Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100015)
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89612Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398994.1