Strain identifier

BacDive ID: 13111

Type strain: Yes

Species: Pseudomonas jessenii

Strain history: CIP <- 1997, D. Izard, Lille Univ., Lille, France: strain CFML 95-307

NCBI tax ID(s): 77298 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 6791

BacDive-ID: 13111

DSM-Number: 17150

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Pseudomonas jessenii DSM 17150 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from mineral water.

NCBI tax id

  • NCBI tax id: 77298
  • Matching level: species

strain history

@refhistory
6791<- CCM <- CCUG <- CIP <- D. Izard
120347CIP <- 1997, D. Izard, Lille Univ., Lille, France: strain CFML 95-307

doi: 10.13145/bacdive13111.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas jessenii
  • full scientific name: Pseudomonas jessenii Verhille et al. 1999

@ref: 6791

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas jessenii

full scientific name: Pseudomonas jessenii Verhille et al. 1999 emend. Kosina et al. 2013

type strain: yes

Morphology

cell morphology

  • @ref: 120347
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 120347

pigmentation

  • @ref: 120347
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6791CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
39252MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
120347CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
120347CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
6791positivegrowth30mesophilic
39252positivegrowth30mesophilic
55323positivegrowth30mesophilic
120347positivegrowth5-30
120347nogrowth37mesophilic
120347nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
55323aerobe
120347obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
120347NaClpositivegrowth0-4 %
120347NaClnogrowth6 %
120347NaClnogrowth8 %
120347NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
12034716947citrate+carbon source
1203474853esculin-hydrolysis
12034717632nitrate+reduction
12034716301nitrite-reduction
12034715882phenol-degradation
12034717632nitrate-respiration

antibiotic resistance

  • @ref: 120347
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12034735581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6
120347oxidase+
120347beta-galactosidase-3.2.1.23
120347alcohol dehydrogenase+1.1.1.1
120347gelatinase-
120347amylase-
120347catalase+1.11.1.6
120347tween esterase-
120347lysine decarboxylase-4.1.1.18
120347ornithine decarboxylase-4.1.1.17
120347tryptophan deaminase-
120347urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120347--++-+----++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6791+--+----+++++-++-++++

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120347+++-+--------------++-----+----+-+---------++--+++++++--+--++++++--+--++++++++-+++-++---+++++++++++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
6791mineral waterFranceFRAEurope
120347Environment, Mineral waterFranceFRAEurope1995

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
67911Risk group (German classification)
1203471Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6791
  • description: Pseudomonas jessenii 16S ribosomal RNA gene, complete sequence
  • accession: AF068259
  • length: 1515
  • database: ena
  • NCBI tax ID: 77298

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas jessenii DSM 17150GCA_002236115contigncbi77298
66792Pseudomonas jessenii strain DSM 1715077298.9wgspatric77298
66792Pseudomonas jessenii strain DSM 1715077298.8wgspatric77298
66792Pseudomonas jessenii DSM 171502917837329draftimg77298

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes91.445no
flagellatedyes84.412no
gram-positiveno98.016no
anaerobicno98.119yes
halophileno86.127no
spore-formingno95.081no
glucose-utilyes93.515yes
aerobicyes94.172yes
thermophileno99.792yes
glucose-fermentno90.157yes

External links

@ref: 6791

culture collection no.: DSM 17150, CCM 4840, CFML 95-307, CIP 105274, CCUG 42059, ATCC 700870

straininfo link

  • @ref: 82319
  • straininfo: 46259

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10188278Taxonomic study of bacteria isolated from natural mineral waters: proposal of Pseudomonas jessenii sp. nov. and Pseudomonas mandelii sp. nov.Verhille S, Baida N, Dabboussi F, Izard D, Leclerc HSyst Appl Microbiol10.1016/S0723-2020(99)80027-71999DNA, Bacterial/analysis, Nucleic Acid Hybridization, Phylogeny, Pseudomonas/*classification/genetics/physiology, RNA, Ribosomal, 16S/genetics, *Water Microbiology
Phylogeny12656147Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea.Kwon SW, Kim JS, Park IC, Yoon SH, Park DH, Lim CK, Go SJInt J Syst Evol Microbiol10.1099/ijs.0.02326-02003Agriculture, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Korea, Microscopy, Electron, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pseudomonas/*classification/genetics/*isolation & purification/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species SpecificityGenetics
Phylogeny17082407Pseudomonas moraviensis sp. nov. and Pseudomonas vranovensis sp. nov., soil bacteria isolated on nitroaromatic compounds, and emended description of Pseudomonas asplenii.Tvrzova L, Schumann P, Sproer C, Sedlacek I, Pacova Z, Sedo O, Zdrahal Z, Steffen M, Lang EInt J Syst Evol Microbiol10.1099/ijs.0.63988-02006Amino Acids/metabolism, Bacterial Typing Techniques, Carbohydrate Metabolism, Czech Republic, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pseudomonas/*classification/cytology/*isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, Ribotyping, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil MicrobiologyMetabolism
Genetics28963214Draft Genome Sequence of the Type Strain Pseudomonas jessenii DSM 17150.Furmanczyk EM, Kaminski MA, Dziembowski A, Lipinski L, Sobczak AGenome Announc10.1128/genomeA.01035-172017

Reference

@idauthorscataloguedoi/urltitle
6791Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17150)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17150
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39252Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17275
55323Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 42059)https://www.ccug.se/strain?id=42059
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
82319Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46259.1StrainInfo: A central database for resolving microbial strain identifiers
120347Curators of the CIPCollection of Institut Pasteur (CIP 105274)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105274