Strain identifier

BacDive ID: 131092

Type strain: Yes

Species: Craurococcus roseus

Strain Designation: NS130

Strain history: CIP <- 1998, Y. Nishimura, Science Univ. of Tokyo, Tokyo, Japan: strain NS130

NCBI tax ID(s): 77585 (species)

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General

@ref: 22384

BacDive-ID: 131092

DSM-Number: 15488

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, coccus-shaped

description: Craurococcus roseus NS130 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 77585
  • Matching level: species

strain history

@refhistory
22384<- JCM/RIKEN <- Y. Nishimura, Dept. Applied Biological Sci., Tokyo Univ. Sci., Noda, Japan; NS130. The 16S rRNA gene sequence of the strain held in the DSMZ is identical with that deposited as LC055641
364641998, Y. Nishimura, Sci. Univ. Tokyo, Japan: strain NS130
67770Y. Nishimura NS130.
122263CIP <- 1998, Y. Nishimura, Science Univ. of Tokyo, Tokyo, Japan: strain NS130

doi: 10.13145/bacdive131092.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Craurococcus
  • species: Craurococcus roseus
  • full scientific name: Craurococcus roseus Saitoh et al. 1998

@ref: 22384

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Craurococcus

species: Craurococcus roseus

full scientific name: Craurococcus roseus Saitoh et al. 1998

strain designation: NS130

type strain: yes

Morphology

cell morphology

  • @ref: 122263
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22384R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
36464MEDIUM 293 - for Craurococcus roseusyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (2.500g);Beef extract (1.500 g);Potato dextrose broth (24.000 g)
122263CIP Medium 293yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=293

culture temp

@refgrowthtypetemperaturerange
22384positivegrowth28mesophilic
36464positivegrowth30mesophilic
67770positivegrowth30mesophilic
122263positivegrowth30-37mesophilic
122263nogrowth10psychrophilic
122263nogrowth41thermophilic
122263nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122263
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12226317632nitrate-reduction
12226316301nitrite-reduction

metabolite production

  • @ref: 122263
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 122263
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
122263oxidase+
122263beta-galactosidase+3.2.1.23
122263alcohol dehydrogenase-1.1.1.1
122263gelatinase-
122263amylase+
122263DNase-
122263caseinase-3.4.21.50
122263catalase+1.11.1.6
122263gamma-glutamyltransferase-2.3.2.2
122263lecithinase-
122263lipase-
122263lysine decarboxylase-4.1.1.18
122263ornithine decarboxylase-4.1.1.17
122263protease-
122263urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122263-+++-++---++--+-----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
22384soilTokyoJapanJPNAsia
67770Soil
122263Environment, SoilTokyoJapanJPNAsia1992

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_158729.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_34992;97_51127;98_104507;99_158729&stattab=map
  • Last taxonomy: Craurococcus roseus subclade
  • 16S sequence: LN907851
  • Sequence Identity:
  • Total samples: 6488
  • soil counts: 2847
  • aquatic counts: 1522
  • animal counts: 1691
  • plant counts: 428

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
223841Risk group (German classification)
1222631Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
22384Craurococcus roseus gene for 16S rRNA, partial sequence, strain: NS130D858281443ena77585
22384Craurococcus roseus gene for 16S ribosomal RNA, partial sequence, strain: JCM 9933LC0556411423ena77585
22384Craurococcus roseus partial 16S rRNA gene, type strain DSM 15488TLN9078511489ena77585

GC content

  • @ref: 22384
  • GC-content: 70.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22384

culture collection no.: DSM 15488, CIP 105707, JCM 9933

straininfo link

  • @ref: 89554
  • straininfo: 60928

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9734062Proposal of Craurococcus roseus gen. nov., sp. nov. and Paracraurococcus ruber gen. nov., sp. nov., novel aerobic bacteriochlorophyll a-containing bacteria from soil.Saitoh S, Suzuki T, Nishimura YInt J Syst Bacteriol10.1099/00207713-48-3-10431998Bacteriochlorophylls/*analysis, Base Sequence, Gram-Negative Aerobic Bacteria/*classification, Molecular Sequence Data, *Soil MicrobiologyGenetics
Phylogeny28954642Caldovatus sediminis gen. nov., sp. nov., a moderately thermophilic bacterium isolated from a hot spring.Habib N, Khan IU, Hussain F, Zhou EM, Xiao M, Ahmed I, Zhi XY, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0023632017Acetobacteraceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22384Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-15488Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15488)
36464Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17757
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89554Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID60928.1
122263Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105707Collection of Institut Pasteur (CIP 105707)