Strain identifier
BacDive ID: 131081
Type strain: 
Species: Bacillus thermoamylovorans
Strain Designation: Amp-choc19
Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; Amp-choc19
NCBI tax ID(s): 35841 (species)
General
@ref: 22373
BacDive-ID: 131081
DSM-Number: 28625
keywords: 16S sequence, Bacteria, mesophilic
description: Bacillus thermoamylovorans Amp-choc19 is a mesophilic bacterium that was isolated from caecal content; TNFdeltaARE/+ C57BL/6 mouse mouse treated with ampicillin.
NCBI tax id
- NCBI tax id: 35841
- Matching level: species
strain history
- @ref: 22373
- history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; Amp-choc19
doi: 10.13145/bacdive131081.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus thermoamylovorans
- full scientific name: Bacillus thermoamylovorans Combet-Blanc et al. 1995
synonyms
- @ref: 20215
- synonym: Caldibacillus thermoamylovorans
@ref: 22373
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus thermoamylovorans
full scientific name: Bacillus thermoamylovorans Combet-Blanc et al. 1995 emend. Coorevits et al. 2011
strain designation: Amp-choc19
type strain: no
Morphology
colony morphology
- @ref: 22373
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 22373
- name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
- growth: yes
- link: https://mediadive.dsmz.de/medium/381
- composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
- @ref: 22373
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22373
- sample type: caecal content; TNFdeltaARE/+ C57BL/6 mouse mouse treated with ampicillin
- geographic location: Freising
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Muridae (Mouse/Rat) |
| #Host Body Product | #Gastrointestinal tract | #Caecal content |
taxonmaps
- @ref: 69479
- File name: preview.99_10160.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_530;97_6036;98_7555;99_10160&stattab=map
- Last taxonomy: Bacillus
- 16S sequence: KR364739
- Sequence Identity:
- Total samples: 32328
- soil counts: 8277
- aquatic counts: 4084
- animal counts: 16352
- plant counts: 3615
Safety information
risk assessment
- @ref: 22373
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22373
- description: Bacillus thermoamylovorans strain Amp-choc19 16S ribosomal RNA gene, partial sequence
- accession: KR364739
- length: 1435
- database: ena
- NCBI tax ID: 35841
External links
@ref: 22373
culture collection no.: DSM 28625
straininfo link
- @ref: 89544
- straininfo: 407414
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22373 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28625 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28625) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 89544 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407414.1 |