Strain identifier

BacDive ID: 131079

Type strain: Yes

Species: Pseudoalteromonas distincta

Strain history: CIP <- 1997, E. Ivanova, Sci. Acad., Vladivostok, Russia <- L.A. Romanenko

NCBI tax ID(s): 77608 (species)

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General

@ref: 22371

BacDive-ID: 131079

DSM-Number: 12749

keywords: genome sequence, 16S sequence, Bacteria, psychrophilic, Gram-negative, motile, rod-shaped

description: Pseudoalteromonas distincta DSM 12749 is a psychrophilic, Gram-negative, motile bacterium that was isolated from Marine sponge from a depth of 350 m near the Komandorskiye Islands.

NCBI tax id

  • NCBI tax id: 77608
  • Matching level: species

strain history

@refhistory
22371<- L. A. Romanenko, Inst. Marine Biol. FEB RAS, Vladivostok; KMM 638
118949CIP <- 1997, E. Ivanova, Sci. Acad., Vladivostok, Russia <- L.A. Romanenko

doi: 10.13145/bacdive131079.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Pseudoalteromonas
  • species: Pseudoalteromonas distincta
  • full scientific name: Pseudoalteromonas distincta (Romanenko et al. 1995) Ivanova et al. 2000

  • synonyms

    @refsynonym
    20215Pseudoalteromonas paragorgicola
    20215Alteromonas distincta

@ref: 22371

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas distincta

full scientific name: Pseudoalteromonas distincta (Romanenko et al. 1995) Ivanova et al. 2000

type strain: yes

Morphology

cell morphology

  • @ref: 118949
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 118949
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22371BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42037Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
118949CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
22371positivegrowth20psychrophilic
42037positivegrowth25mesophilic
118949positivegrowth5-30
118949nogrowth37mesophilic
118949nogrowth41thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
118949NaClpositivegrowth4-6 %
118949NaClnogrowth0 %
118949NaClnogrowth2 %
118949NaClnogrowth8 %
118949NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11894917632nitrate+reduction
11894916301nitrite-reduction

metabolite production

  • @ref: 118949
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11894915688acetoin-
11894917234glucose+

enzymes

@refvalueactivityec
118949oxidase+
118949beta-galactosidase-3.2.1.23
118949alcohol dehydrogenase-1.1.1.1
118949gelatinase+/-
118949amylase+
118949caseinase+3.4.21.50
118949catalase+1.11.1.6
118949tween esterase+
118949lecithinase-
118949lipase+
118949lysine decarboxylase-4.1.1.18
118949ornithine decarboxylase-4.1.1.17
118949phenylalanine ammonia-lyase-4.3.1.24
118949protease+
118949tryptophan deaminase-
118949urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118949-+-+-++--+++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118949---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrygeographic locationcontinentisolation date
22371Marine sponge from a depth of 350 m near the Komandorskiye IslandsRussiaRUS
118949SpongeRussian FederationRUSKomandorskie IslandsEurope1991

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Porifera (Sponges)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1002.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_122;97_129;98_145;99_1002&stattab=map
  • Last taxonomy: Pseudoalteromonas
  • 16S sequence: AF043742
  • Sequence Identity:
  • Total samples: 3222
  • soil counts: 24
  • aquatic counts: 2792
  • animal counts: 384
  • plant counts: 22

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
223711Risk group (German classification)
1189491Risk group (French classification)

Sequence information

16S sequences

  • @ref: 22371
  • description: Alteromonas distincta 16S ribosomal RNA gene, partial sequence
  • accession: AF043742
  • length: 1458
  • database: ena
  • NCBI tax ID: 77608

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudoalteromonas distincta ATCC 70051877608.3wgspatric77608
66792Pseudoalteromonas distincta ATCC 7005182627854061draftimg77608
66792Pseudoalteromonas distincta ATCC 700518GCA_000814675scaffoldncbi77608

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.633no
flagellatedyes88.822no
gram-positiveno99.211no
anaerobicno97.723no
halophileyes63.169no
spore-formingno96.594no
glucose-utilyes92.593no
aerobicyes91.478no
glucose-fermentno79.076no
thermophileno98.867yes

External links

@ref: 22371

culture collection no.: DSM 12749, ATCC 700518, CIP 105340, KMM 638, VKM B-2136 D

straininfo link

  • @ref: 89542
  • straininfo: 46242

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10826797Reclassification of Alteromonas distincta Romanenko et al. 1995 as Pseudoalteromonas distincta comb. nov.Ivanova EP, Chun J, Romanenko LA, Matte ME, Mikhailov VV, Frolova GM, Huq A, Colwell RRInt J Syst Evol Microbiol10.1099/00207713-50-1-1412000Alteromonas/*classification/genetics, Cloning, Molecular, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAEnzymology
Phylogeny10826813Assignment of Alteromonas elyakovii KMM 162T and five strains isolated from spot-wounded fronds of Laminaria japonica to Pseudoalteromonas elyakovii comb. nov. and the extended description of the species.Sawabe T, Tanaka R, Iqbal MM, Tajima K, Ezura Y, Ivanova EP, Christen RInt J Syst Evol Microbiol10.1099/00207713-50-1-2652000Alteromonas/*classification/cytology/genetics/physiology, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Gammaproteobacteria/*classification/cytology/genetics/physiology, Laminaria/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Water MicrobiologyGenetics
Enzymology11217976Structure of an acidic polysaccharide from a marine bacterium Pseudoalteromonas distincta KMM 638 containing 5-acetamido-3,5,7,9-tetradeoxy-7-formamido-L-glycero-L-manno-nonulosonic acid.Muldoon J, Shashkov AS, Senchenkova SN, Tomshich SV, Komandrova NA, Romanenko LA, Knirel YA, Savage AVCarbohydr Res10.1016/s0008-6215(00)00280-92001Alteromonas/*chemistry, Animals, Carbohydrate Conformation, Carbohydrate Sequence, Lipopolysaccharides/*chemistry/isolation & purification, Marine Biology, Molecular Sequence Data, Nuclear Magnetic Resonance, Biomolecular, O Antigens/chemistry/isolation & purification, Porifera/chemistry, Sialic Acids/*chemistry, Spectrometry, Mass, Electrospray IonizationPhylogeny
Phylogeny18768597Pseudoalteromonas arctica sp. nov., an aerobic, psychrotolerant, marine bacterium isolated from Spitzbergen.Al Khudary R, Stosser NI, Qoura F, Antranikian GInt J Syst Evol Microbiol10.1099/ijs.0.64963-02008Anaerobiosis, Arctic Regions, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Carboxylic Acids/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella, Genes, rRNA, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pseudoalteromonas/*classification/genetics/*isolation & purification/physiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, TemperatureMetabolism
Phylogeny35222308Genome-Based Classification of Strain 16-SW-7, a Marine Bacterium Capable of Converting B Red Blood Cells, as Pseudoalteromonas distincta and Proposal to Reclassify Pseudoalteromonas paragorgicola as a Later Heterotypic Synonym of Pseudoalteromonas distincta.Nedashkovkaya OI, Kim SG, Balabanova LA, Zhukova NV, Son OM, Tekutyeva LA, Mikhailov VVFront Microbiol10.3389/fmicb.2021.8094312022

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22371Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-12749Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12749)
42037Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17349
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89542Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID46242.1
118949Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105340Collection of Institut Pasteur (CIP 105340)