Strain identifier
BacDive ID: 131074
Type strain: 
Species: Paracoccus sp.
Strain Designation: BD-d317
Strain history: <- C. O. Jeon, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; BD-d317
NCBI tax ID(s): 189685 (species)
version 9 (current version)
General
@ref: 22366
BacDive-ID: 131074
DSM-Number: 19996
keywords: 16S sequence, Bacteria
description: Paracoccus sp. BD-d317 is a bacterium that was isolated from contaminated soil.
NCBI tax id
- NCBI tax id: 189685
- Matching level: species
strain history
- @ref: 22366
- history: <- C. O. Jeon, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; BD-d317
doi: 10.13145/bacdive131074.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Paracoccaceae
- genus: Paracoccus
- species: Paracoccus sp.
- full scientific name: Paracoccus Davis 1969 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Thiosphaera
@ref: 22366
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Paracoccus
species: Paracoccus sp.
full scientific name: Paracoccus sp.
strain designation: BD-d317
type strain: no
Culture and growth conditions
culture medium
- @ref: 22366
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 22366
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 22366
- sample type: contaminated soil
- geographic location: Busan
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_97288.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_529;97_2307;98_2844;99_97288&stattab=map
- Last taxonomy: Paracoccus yeei
- 16S sequence: EF575566
- Sequence Identity:
- Total samples: 1806
- soil counts: 422
- aquatic counts: 857
- animal counts: 483
- plant counts: 44
Sequence information
16S sequences
- @ref: 22366
- description: Paracoccus sp. BD-d317 16S ribosomal RNA gene, partial sequence
- accession: EF575566
- length: 1428
- database: nuccore
- NCBI tax ID: 443613
External links
@ref: 22366
culture collection no.: DSM 19996
straininfo link
- @ref: 89537
- straininfo: 403642
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22366 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19996 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19996) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89537 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403642.1 |