Strain identifier

BacDive ID: 131008

Type strain: No

Species: Pseudomonas stutzeri

Strain Designation: ST-9

Strain history: <- R. Cahan, Ariel University, Center of Samaria, Israel; ST-9 <- E. Michael and R. Cahan

NCBI tax ID(s): 203192 (species), 316 (species)

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General

@ref: 22300

BacDive-ID: 131008

DSM-Number: 24582

keywords: genome sequence, Bacteria, aerobe, mesophilic, human pathogen

description: Pseudomonas stutzeri ST-9 is an aerobe, mesophilic human pathogen that was isolated from soil contaminated with toluene.

NCBI tax id

NCBI tax idMatching level
203192species
316species

strain history

  • @ref: 22300
  • history: <- R. Cahan, Ariel University, Center of Samaria, Israel; ST-9 <- E. Michael and R. Cahan

doi: 10.13145/bacdive131008.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 22300

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946

strain designation: ST-9

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22300TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
22300MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)yeshttps://mediadive.dsmz.de/medium/457Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22300positivegrowth28mesophilic
62908positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62908
  • oxygen tolerance: aerobe

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
22300soil contaminated with tolueneSamariaIsraelISRAsia
62908SoilSamaria,BarkanIsraelISRAsia2009-01-01

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 22300
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Stutzerimonas stutzeri ST-9GCA_000982865contigncbi316
66792Pseudomonas stutzeri ST-92648501316draftimg316

External links

@ref: 22300

culture collection no.: DSM 24582, CCUG 62911

straininfo link

  • @ref: 89479
  • straininfo: 405250

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics26044424Draft Genome Sequence of the Toluene-Degrading Pseudomonas stutzeri Strain ST-9.Gomila M, Busquets A, Garcia-Valdes E, Michael E, Cahan R, Nitzan Y, Lalucat JGenome Announc10.1128/genomeA.00567-152015
Pathogenicity27256870Effect of toluene on Pseudomonas stutzeri ST-9 morphology - plasmolysis, cell size, and formation of outer membrane vesicles.Michael E, Nitzan Y, Langzam Y, Luboshits G, Cahan RCan J Microbiol10.1139/cjm-2016-00992016Carbon/*metabolism, Cell Membrane/drug effects/ultrastructure, Cell Size/drug effects, Extracellular Vesicles/*drug effects, Flow Cytometry, Glucose/*metabolism, Osmotic Pressure, Pseudomonas stutzeri/*drug effects/ultrastructure, Toluene/*toxicityMetabolism
Metabolism28276695Proteomic Assessment of the Expression of Genes Related to Toluene Catabolism and Porin Synthesis in Pseudomonas stutzeri ST-9.Michael E, Gomila M, Lalucat J, Nitzan Y, Pechatnikov I, Cahan RJ Proteome Res10.1021/acs.jproteome.6b010442017Bacterial Outer Membrane Proteins/biosynthesis/genetics, Gene Expression Regulation, Bacterial/drug effects, Glucose/metabolism/pharmacology, Liposomes/metabolism, Mass Spectrometry, Porins/*biosynthesis/genetics, *Proteomics, Pseudomonas stutzeri/*genetics/growth & development/metabolism, Toluene/*metabolism/pharmacologyPathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22300Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24582Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24582)
62908Curators of the CCUGhttps://www.ccug.se/strain?id=62911Culture Collection University of Gothenburg (CCUG) (CCUG 62911)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
89479Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405250.1