Strain identifier
BacDive ID: 131005
Type strain: 
Species: Pseudomonas sp.
Strain history: <- A. Paulo, Lab. Microbiology, Wageningen Univ., Netherlands; SN2
NCBI tax ID(s): 306 (species)
version 8.1 (current version)
General
@ref: 22297
BacDive-ID: 131005
DSM-Number: 26096
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudomonas sp. DSM 26096 is a mesophilic bacterium that was isolated from activated sludge.
NCBI tax id
- NCBI tax id: 306
- Matching level: species
strain history
- @ref: 22297
- history: <- A. Paulo, Lab. Microbiology, Wageningen Univ., Netherlands; SN2
doi: 10.13145/bacdive131005.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas sp.
- full scientific name: Pseudomonas Migula 1894 (Approved Lists 1980)
synonyms
@ref synonym 20215 Serpens 20215 Flavimonas 20215 Stutzerimonas
@ref: 22297
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas sp.
full scientific name: Pseudomonas sp.
type strain: no
Morphology
multimedia
- @ref: 22297
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_26096.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 22297
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 22297
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | + | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22297 | + | - | - | + | - | - | - | - | + | - | - | - | - | - | + | + | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 22297
- sample type: activated sludge
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Activated sludge
taxonmaps
- @ref: 69479
- File name: preview.99_295.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_203;97_221;98_250;99_295&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: JF461538
- Sequence Identity:
- Total samples: 5736
- soil counts: 862
- aquatic counts: 2237
- animal counts: 2039
- plant counts: 598
Sequence information
16S sequences
- @ref: 22297
- description: Pseudomonas nitroreducens strain SN2 16S ribosomal RNA gene, partial sequence
- accession: JF461538
- length: 1412
- database: ena
- NCBI tax ID: 46680
External links
@ref: 22297
culture collection no.: DSM 26096, SN 2
straininfo link
- @ref: 89476
- straininfo: 405007
literature
- topic: Enzymology
- Pubmed-ID: 7068529
- title: Purification and properties of a new enzyme, DL-2-haloacid dehalogenase, from Pseudomonas sp.
- authors: Motosugi K, Esaki N, Soda K
- journal: J Bacteriol
- DOI: 10.1128/jb.150.2.522-527.1982
- year: 1982
- mesh: Acetates/metabolism, Amino Acids/analysis, Carboxylic Acids/metabolism, Halogens, Hydrogen-Ion Concentration, Hydrolases/analysis/*isolation & purification/metabolism, Molecular Weight, Pseudomonas/*enzymology, Substrate Specificity, Temperature
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22297 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26096 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26096) | |
| 68369 | Automatically annotated from API 20NE | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89476 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405007.1 |