Strain identifier

BacDive ID: 1310

Type strain: No

Species: Bacillus velezensis

Strain Designation: FZB42

Strain history: <- H. Junge, ABiTEP GmbH, Berlin, Germany; FZB42 <- B. Krebs et al.

NCBI tax ID(s): 492670 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16716

BacDive-ID: 1310

DSM-Number: 23117

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Bacillus velezensis FZB42 is a mesophilic bacterium that was isolated from plant-pathogen infested soil and its organic material.

NCBI tax id

  • NCBI tax id: 492670
  • Matching level: species

strain history

  • @ref: 16716
  • history: <- H. Junge, ABiTEP GmbH, Berlin, Germany; FZB42 <- B. Krebs et al.

doi: 10.13145/bacdive1310.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus velezensis
  • full scientific name: Bacillus velezensis Ruiz-García et al. 2005
  • synonyms

    @refsynonym
    20215Bacillus methylotrophicus
    20215Bacillus amyloliquefaciens subsp. plantarum

@ref: 16716

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus velezensis

full scientific name: Bacillus velezensis Ruiz-García et al. 2005

strain designation: FZB42

type strain: no

Culture and growth conditions

culture medium

  • @ref: 16716
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1; with strain-specific modifications) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l MnSO4 0.01 g/l Distilled water

culture temp

  • @ref: 16716
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 16716
  • sample type: plant-pathogen infested soil and its organic material
  • geographic location: Berlin
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Other
#Host#Plants

Safety information

risk assessment

  • @ref: 16716
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Bacillus amyloliquefaciens strain DSM 23117 16S ribosomal RNA gene, partial sequence
  • accession: KC510187
  • length: 803
  • database: ena
  • NCBI tax ID: 1390

Genome sequences

  • @ref: 66792
  • description: Bacillus velezensis FZB42
  • accession: GCA_000015785
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 326423

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes87.668no
motileyes87.668no
flagellatedyes82.677no
flagellatedyes82.677no
gram-positiveyes91.423no
gram-positiveyes91.423no
anaerobicno99.435no
anaerobicno99.435no
halophileyes88.727no
halophileyes88.727no
spore-formingyes96.038no
spore-formingyes96.038no
thermophileno96.622yes
thermophileno96.622yes
glucose-utilyes88.013no
glucose-utilyes88.013no
aerobicyes92.736no
aerobicyes92.736no
glucose-fermentno91.127no
glucose-fermentno91.127no

External links

@ref: 16716

culture collection no.: DSM 23117, BGSC 10A6, LMG 26770

straininfo link

  • @ref: 70961
  • straininfo: 378027

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25835027Phylogenomic analysis shows that Bacillus amyloliquefaciens subsp. plantarum is a later heterotypic synonym of Bacillus methylotrophicus.Dunlap CA, Kim SJ, Kwon SW, Rooney APInt J Syst Evol Microbiol10.1099/ijs.0.0002262015Bacillus/*classification/genetics, DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Sequence Analysis, DNAGenetics
Genetics26430040Genome Sequence of Antibiotic-Producing Bacillus amyloliquefaciens Strain KCTC 13012.Jeong H, Park SH, Choi SKGenome Announc10.1128/genomeA.01121-152015
Genetics26702995Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp. plantarum and 'Bacillus oryzicola' are later heterotypic synonyms of Bacillus velezensis based on phylogenomics.Dunlap CA, Kim SJ, Kwon SW, Rooney APInt J Syst Evol Microbiol10.1099/ijsem.0.0008582015
27152321Plantazolicin is an ultra-narrow spectrum antibiotic that targets the Bacillus anthracis membrane.Molohon KJ, Saint-Vincent PMB, Park S, Doroghazi JR, Maxson T, Hershfield JR, Flatt KM, Schroeder NE, Ha T, Mitchell DAACS Infect Dis10.1021/acsinfecdis.5b001152015
28163698Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis Form an "Operational Group B. amyloliquefaciens" within the B. subtilis Species Complex.Fan B, Blom J, Klenk HP, Borriss RFront Microbiol10.3389/fmicb.2017.000222017
Metabolism28754632Small RNA profiling reveals important roles for miRNAs in Arabidopsis response to Bacillus velezensis FZB42.Xie S, Jiang H, Xu Z, Xu Q, Cheng BGene10.1016/j.gene.2017.07.0642017Arabidopsis/immunology/*microbiology/physiology, Bacillus/*physiology, Gene Expression Profiling, MicroRNAs/*metabolism, Promoter Regions, Genetic, Pseudomonas syringae/*physiology, RNA, Plant/*metabolism
29063401Biofilm formation is determinant in tomato rhizosphere colonization by Bacillus velezensis FZB42.Al-Ali A, Deravel J, Krier F, Bechet M, Ongena M, Jacques PEnviron Sci Pollut Res Int10.1007/s11356-017-0469-12017Bacillus/genetics/growth & development/*physiology, *Biofilms, Lycopersicon esculentum/growth & development/*microbiology, Plant Roots/microbiology, Rhizosphere, *Soil Microbiology
Genetics29472321Complete Genome Sequence of vB_BveP-Goe6, a Virus Infecting Bacillus velezensis FZB42.Schilling T, Hoppert M, Daniel R, Hertel RGenome Announc10.1128/genomeA.00008-182018
Metabolism29856856A comprehensive understanding of the biocontrol potential of Bacillus velezensis LM2303 against Fusarium head blight.Chen L, Heng J, Qin S, Bian KPLoS One10.1371/journal.pone.01985602018Anti-Bacterial Agents/metabolism, Antifungal Agents/metabolism, Bacillus/genetics/*metabolism, Biological Control Agents/*metabolism, Disease Resistance, Fusarium/*pathogenicity, Genome, Bacterial/genetics, Multigene Family/genetics, Plant Diseases/microbiology/*prevention & control, Triticum/*microbiology, Whole Genome SequencingGenetics
30386322Bacillus velezensis FZB42 in 2018: The Gram-Positive Model Strain for Plant Growth Promotion and Biocontrol.Fan B, Wang C, Song X, Ding X, Wu L, Wu H, Gao X, Borriss RFront Microbiol10.3389/fmicb.2018.024912018
Genetics30533616Genome Sequence of the Probiotic Strain Bacillus velezensis Variant polyfermenticus GF423.Jeong H, Kim J, Choi SK, Pan JGMicrobiol Resour Announc10.1128/MRA.01000-182018
Enzymology30798571Detailed Mode of Action of Arabinan-Debranching alpha-L-Arabinofuranosidase GH51 from Bacillus velezensis.Oh GW, Kang Y, Choi CY, Kang SY, Kang JH, Lee ML, Han NS, Kim TJJ Microbiol Biotechnol10.4014/jmb.1807.110352019Amino Acid Sequence, Arabinose/metabolism, Bacillus/*enzymology/genetics, Bacterial Proteins/chemistry/genetics/isolation & purification/*metabolism, Beta vulgaris/chemistry, Cloning, Molecular, Escherichia coli/enzymology/genetics, Gene Expression, Glycoside Hydrolases/chemistry/genetics/isolation & purification/*metabolism, Hydrogen-Ion Concentration, Hydrolysis, Kinetics, Molecular Weight, Polysaccharides/*metabolism, Recombinant Proteins/chemistry/isolation & purification/metabolism, Substrate Specificity, TemperatureMetabolism
Phylogeny30911788Bacillus velezensis: phylogeny, useful applications, and avenues for exploitation.Adeniji AA, Loots DT, Babalola OOAppl Microbiol Biotechnol10.1007/s00253-019-09710-52019Bacillus/*classification/genetics/isolation & purification/*metabolism, Food Microbiology, Genome, Bacterial, Genomics, Industrial Microbiology, Metabolome, *PhylogenyGenetics
Pathogenicity30989253Engineered biosynthesis of cyclic lipopeptide locillomycins in surrogate host Bacillus velezensis FZB42 and derivative strains enhance antibacterial activity.Luo C, Chen Y, Liu X, Wang X, Wang X, Li X, Zhao Y, Wei LAppl Microbiol Biotechnol10.1007/s00253-019-09784-12019Anti-Bacterial Agents/*biosynthesis, Bacillus/genetics/*metabolism, Bacterial Proteins/*biosynthesis/genetics, Biosynthetic Pathways/*genetics, Gene Expression, Lipopeptides/*biosynthesis/genetics, Metabolic Engineering/*methods, Methicillin-Resistant Staphylococcus aureus/drug effects, Microbial Sensitivity Tests, Multigene Family, Peptides, Cyclic/*biosynthesis/genetics, Recombinant Proteins/*biosynthesis/geneticsBiotechnology
Genetics31098827Complete Genome of Bacillus velezensis CMT-6 and Comparative Genome Analysis Reveals Lipopeptide Diversity.Deng Q, Wang R, Sun D, Sun L, Wang Y, Pu Y, Fang Z, Xu D, Liu Y, Ye R, Yin S, Xie S, Gooneratne RBiochem Genet10.1007/s10528-019-09927-z2019Bacillus/*genetics, Bacterial Proteins/*genetics, Genetic Variation, Genome, Bacterial/*genetics, Lipopeptides/*genetics, Peptide Synthases/genetics, Whole Genome Sequencing
Transcriptome31219564AmyloWiki: an integrated database for Bacillus velezensis FZB42, the model strain for plant growth-promoting Bacilli.Fan B, Wang C, Ding X, Zhu B, Song X, Borriss RDatabase (Oxford)10.1093/database/baz0712019*Bacillus/genetics/metabolism, *Bacterial Proteins/biosynthesis/genetics, *Databases, Genetic, Plants/microbiology, Proteomics, *TranscriptomeMetabolism
31244802Corrigendum: Bacillus velezensis FZB42 in 2018: The Gram-Positive Model Strain for Plant Growth Promotion and Biocontrol.Fan B, Wang C, Song X, Ding X, Wu L, Wu H, Gao X, Borriss RFront Microbiol10.3389/fmicb.2019.012792019
31537661Bacillus velezensis UTB96 Is an Antifungal Soil Isolate with a Reduced Genome Size Compared to That of Bacillus velezensis FZB42.Vahidinasab M, Ahmadzadeh M, Henkel M, Hausmann R, Morabbi Heravi KMicrobiol Resour Announc10.1128/MRA.00667-192019
Metabolism31614702Identification of miRNAs Involved in Bacillus velezensis FZB42-Activated Induced Systemic Resistance in Maize.Xie S, Yu H, Li E, Wang Y, Liu J, Jiang HInt J Mol Sci10.3390/ijms202050572019Bacillus/pathogenicity, *Disease Resistance, MicroRNAs/*genetics/metabolism, Plant Proteins/genetics/metabolism, Transcription Factors/genetics/metabolism, Zea mays/*genetics/immunology/microbiology
Enzymology32002598The "pseudo-pathogenic" effect of plant growth-promoting Bacilli on starchy plant storage organs is due to their alpha-amylase activity which is stimulating endogenous opportunistic pathogens.Wu L, Li X, Ma L, Blom J, Wu H, Gu Q, Borriss R, Gao XAppl Microbiol Biotechnol10.1007/s00253-020-10367-82020Bacillus subtilis/enzymology/*genetics/*pathogenicity, Mutation, Onions/microbiology, *Plant Development, Plant Diseases/*microbiology, Plant Roots/microbiology, Proteobacteria/physiology, Solanum tuberosum/microbiology, Whole Genome Sequencing, alpha-Amylases/*metabolismGenetics
Phylogeny32052194Phage vB_BveM-Goe7 represents a new genus in the subfamily Bastillevirinae.Furrer AD, Bomeke M, Hoppert M, Hertel RArch Virol10.1007/s00705-020-04546-12020Bacillus/*virology, Bacteriophages/classification/genetics/*isolation & purification/ultrastructure, Genome, Viral, Myoviridae/classification/genetics/*isolation & purification/ultrastructure, Open Reading Frames, PhylogenyEnzymology
32894363Bacillus velezensis 83 a bacterial strain from mango phyllosphere, useful for biological control and plant growth promotion.Balderas-Ruiz KA, Bustos P, Santamaria RI, Gonzalez V, Cristiano-Fajardo SA, Barrera-Ortiz S, Mezo-Villalobos M, Aranda-Ocampo S, Guevara-Garcia AA, Galindo E, Serrano-Carreon LAMB Express10.1186/s13568-020-01101-82020
Metabolism33043389A novel Rap-Phr system in Bacillus velezensis NAU-B3 regulates surfactin production and sporulation via interaction with ComA.Liang Z, Qiao JQ, Li PP, Zhang LL, Qiao ZX, Lin L, Yu CJ, Yang Y, Zubair M, Gu Q, Wu HJ, Borriss R, Gao XWAppl Microbiol Biotechnol10.1007/s00253-020-10942-z2020Bacillus, Bacillus subtilis/genetics/metabolism, Bacterial Proteins/genetics/metabolism, *Gene Expression Regulation, Bacterial, *Spores, Bacterial/metabolismBiotechnology
Genetics33281792Comparative Genomics Analysis Provides New Strategies for Bacteriostatic Ability of Bacillus velezensis HAB-2.Xu P, Xie S, Liu W, Jin P, Wei D, Yaseen DG, Wang Y, Miao WFront Microbiol10.3389/fmicb.2020.5940792020
33347710Identification of Collimonas gene loci involved in the biosynthesis of a diffusible secondary metabolite with broad-spectrum antifungal activity and plant-protective properties.Akum FN, Kumar R, Lai G, Williams CH, Doan HK, Leveau JHJMicrob Biotechnol10.1111/1751-7915.137162020Antifungal Agents, Bacillus, *Fusarium, *Lycopersicon esculentum, Oxalobacteraceae, Plant Diseases
Proteome33990691A native conjugative plasmid confers potential selective advantages to plant growth-promoting Bacillus velezensis strain GH1-13.Choi Y, Pham H, Nguyen MP, Tran LVH, Kim J, Kim S, Lee CW, Song J, Kim YHCommun Biol10.1038/s42003-021-02107-z2021Anti-Bacterial Agents/*pharmacology, Bacillus/*physiology, Bacterial Proteins/genetics/*metabolism, Biofilms/*growth & development, *Conjugation, Genetic, *Drug Resistance, Microbial, Gene Expression Profiling, Plant Development, Plasmids/*genetics, Proteome, Quorum SensingMetabolism
34205485Two Lysine Sites That Can Be Malonylated Are Important for LuxS Regulatory Roles in Bacillus velezensis.Cao X, Li Y, Fan J, Zhao Y, Borriss R, Fan BMicroorganisms10.3390/microorganisms90613382021
Phylogeny34210064Killing Effect of Bacillus Velezensis FZB42 on a Xanthomonas Campestris pv. Campestris (Xcc) Strain Newly Isolated from Cabbage Brassica Oleracea Convar. Capitata (L.): A Metabolomic Study.Macha H, Maresova H, Jurikova T, Svecova M, Benada O, Skriba A, Baranek M, Novotny C, Palyzova AMicroorganisms10.3390/microorganisms90714102021
34293909Biocontrol Activity of Bacillus spp. and Pseudomonas spp. Against Botrytis cinerea and Other Cannabis Fungal Pathogens.Balthazar C, Novinscak A, Cantin G, Joly DL, Filion MPhytopathology10.1094/PHYTO-03-21-0128-R2022*Bacillus/genetics, Botrytis, *Cannabis, Plant Diseases/microbiology, Pseudomonas/genetics
Metabolism34550513Up-Regulated Salivary Proteins of Brown Marmorated Stink Bug Halyomorpha halys on Plant Growth-Promoting Rhizobacteria-Treated Plants.Serteyn L, Lourme O, Iannello L, Baiwir D, Mazzucchelli G, Ongena M, Francis FJ Chem Ecol10.1007/s10886-021-01293-82021Animals, Bacillus/*growth & development, Chromatography, High Pressure Liquid, Heteroptera/growth & development/*metabolism, Larva/metabolism, Salivary Glands/metabolism, Salivary Proteins and Peptides/*analysis, Stress, Physiological, Tandem Mass Spectrometry, Up-Regulation, Vicia faba/chemistry/*microbiology/parasitologyProteome
Biotechnology34550751The Plant-Beneficial Rhizobacterium Bacillus velezensis FZB42 Controls the Soybean Pathogen Phytophthora sojae Due to Bacilysin Production.Han X, Shen D, Xiong Q, Bao B, Zhang W, Dai T, Zhao Y, Borriss R, Fan BAppl Environ Microbiol10.1128/AEM.01601-212021Anti-Bacterial Agents/biosynthesis, *Antibiosis, Bacillus/metabolism/*physiology, Biological Control Agents, Dipeptides/biosynthesis, *Phytophthora/pathogenicity, Soybeans/*microbiologyMetabolism
Phylogeny34579349Isolation and Characterization of Endophyte Bacillus velezensis KOF112 from Grapevine Shoot Xylem as Biological Control Agent for Fungal Diseases.Hamaoka K, Aoki Y, Suzuki SPlants (Basel)10.3390/plants100918152021
Pathogenicity34610294Plant immune system activation is necessary for efficient root colonization by auxin-secreting beneficial bacteria.Tzipilevich E, Russ D, Dangl JL, Benfey PNCell Host Microbe10.1016/j.chom.2021.09.0052021Arabidopsis/genetics/*immunology/microbiology, Bacillus/genetics/growth & development/metabolism, Host Microbial Interactions, Indoleacetic Acids/*metabolism, *Plant Immunity, Plant Roots/immunology/*microbiology, Reactive Oxygen Species/immunology, RhizosphereMetabolism
Genetics34932137Complete genome sequence of Bacillus velezensis YYC, a bacterium isolated from the tomato rhizosphere.Yan Y, Xu W, Chen W, Hu Y, Wang ZArch Microbiol10.1007/s00203-021-02709-52021*Bacillus/genetics, Genome, Bacterial, *Lycopersicon esculentum, Rhizosphere
Metabolism35107331Comparative Genome Analysis Reveals Phylogenetic Identity of Bacillus velezensis HNA3 and Genomic Insights into Its Plant Growth Promotion and Biocontrol Effects.Zaid DS, Cai S, Hu C, Li Z, Li YMicrobiol Spectr10.1128/spectrum.02169-212022Antifungal Agents/metabolism, Bacillus/classification/*genetics/metabolism, Bacterial Proteins/genetics/metabolism, Biological Control Agents/*metabolism, Genome, Bacterial, Genomics, Multigene Family, *Phylogeny, Plant Growth Regulators/biosynthesis, Secondary MetabolismPhylogeny
35147443Synergistic Effects of a Root-Endophytic Trichoderma Fungus and Bacillus on Early Root Colonization and Defense Activation Against Verticillium longisporum in Rapeseed.Hafiz FB, Moradtalab N, Goertz S, Rietz S, Dietel K, Rozhon W, Humbeck K, Geistlinger J, Neumann G, Schellenberg IMol Plant Microbe Interact10.1094/MPMI-11-21-0274-R2022*Arabidopsis/microbiology, *Ascomycota, *Bacillus, *Brassica napus/genetics, *Brassica rapa, Plant Diseases/microbiology, Plant Roots/microbiology, *Trichoderma/physiology, *Verticillium/physiology
Genetics35242952Genome sequence data of Bacillus velezensis BP1.2A and BT2.4.Blumenscheit C, Jahne J, Schneider A, Blom J, Schweder T, Lasch P, Borriss RData Brief10.1016/j.dib.2022.1079782022
Metabolism35380452Annulment of Bacterial Antagonism Improves Plant Beneficial Activity of a Bacillus velezensis Consortium.Shao J, Liu Y, Xie J, Stefanic P, Lv Y, Fan B, Mandic-Mulec I, Zhang R, Shen Q, Xu ZAppl Environ Microbiol10.1128/aem.00240-222022*Bacillus/metabolism, Bacterial Proteins/genetics, *Plant Roots/microbiology, Rhizosphere
Biotechnology36363818Characterization of Bacillus velezensis UTB96, Demonstrating Improved Lipopeptide Production Compared to the Strain B. velezensis FZB42.Vahidinasab M, Adiek I, Hosseini B, Akintayo SO, Abrishamchi B, Pfannstiel J, Henkel M, Lilge L, Voegele RT, Hausmann RMicroorganisms10.3390/microorganisms101122252022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16716Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23117)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23117
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
70961Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID378027.1StrainInfo: A central database for resolving microbial strain identifiers