Archive BacDiveID:10.13145/bacdive130982.20230509.8.1

Strain identifier

BacDive ID: 130982

Type strain:

Species: Methylobacterium sp.

Strain Designation: C61+2-34

Strain history: <- P. Kämpfer, Justus-Liebig-Universität; C61+2-34 <- S.A. Wellner

NCBI tax ID(s): 409 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 22274

BacDive-ID: 130982

DSM-Number: 23674

keywords: genome sequence, Bacteria, mesophilic

description: Methylobacterium sp. C61+2-34 is a mesophilic bacterium that was isolated from leaf of Cerastium holosteoides.

NCBI tax id

NCBI tax id: 409
Matching level: species

strain history

@ref: 22274
history: <- P. Kämpfer, Justus-Liebig-Universität; C61+2-34 <- S.A. Wellner

doi: 10.13145/bacdive130982.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Methylobacteriaceae
genus: Methylobacterium
species: Methylobacterium sp.
full scientific name: Methylobacterium Patt et al. 1976 (Approved Lists 1980)

@ref: 22274

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Methylobacteriaceae

genus: Methylobacterium

species: Methylobacterium sp.

full scientific name: Methylobacterium sp.

strain designation: C61+2-34

type strain: no

Culture and growth conditions

culture medium

@ref: 22274
name: METHYLOBACTERIUM MEDIUM (DSMZ Medium 125)
growth: yes
link: https://mediadive.dsmz.de/medium/125
composition: Name: METHYLOBACTERIUM MEDIUM (DSMZ Medium 125) Composition: Agar 12.0 g/l KNO3 1.0 g/l Na2HPO4 0.23 g/l MgSO4 x 7 H2O 0.2 g/l NaH2PO4 0.07 g/l CaCl2 x 2 H2O 0.02 g/l FeSO4 x 7 H2O 0.001 g/l ZnSO4 x 7 H2O 7e-05 g/l H3BO3 1e-05 g/l MnSO4 x 5 H2O 1e-05 g/l MoO3 1e-05 g/l CuSO4 x 5 H2O 5e-06 g/l Distilled water

culture temp

@ref: 22274
growth: positive
type: growth
temperature: 25
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 22274
sample type: leaf of Cerastium holosteoides
host species: Cerastium holosteoides
geographic location: Thüringen, exploratory Hainich-Dün
country: Germany
origin.country: DEU
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Sequence information

Genome sequences

@ref: 66792
description: Methylobacterium thuringiense DSM 23674
accession: GCA_022179645
assembly level: contig
database: ncbi
NCBI tax ID: 1003091

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	no	78.06	no
gram-positive	no	97.324	no
anaerobic	no	97.531	no
aerobic	yes	88.805	no
halophile	no	93.354	no
spore-forming	no	93.952	no
motile	yes	87.038	no
glucose-ferment	no	91.33	no
thermophile	no	98.622	yes
glucose-util	yes	87.076	no

External links

@ref: 22274

culture collection no.: DSM 23674

straininfo link

@ref: 89454
straininfo: 399941

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
22274	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-23674	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23674)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
89454	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID399941.1