Strain identifier

BacDive ID: 13098

Type strain: No

Species: Pseudomonas umsongensis

Strain Designation: B2

Strain history: <- J. Zeyer, B2

NCBI tax ID(s): 198618 (species)

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General

@ref: 2625

BacDive-ID: 13098

DSM-Number: 6376

keywords: Bacteria, mesophilic

description: Pseudomonas umsongensis B2 is a mesophilic bacterium of the family Pseudomonadaceae.

NCBI tax id

  • NCBI tax id: 198618
  • Matching level: species

strain history

  • @ref: 2625
  • history: <- J. Zeyer, B2

doi: 10.13145/bacdive13098.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas umsongensis
  • full scientific name: Pseudomonas umsongensis Kwon et al. 2003

@ref: 2625

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas umsongensis

full scientific name: Pseudomonas umsongensis Kwon et al. 2003

strain designation: B2

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2625MINERAL MEDIUM WITH O-NITROPHENOL (DSMZ Medium 461c)yeshttps://mediadive.dsmz.de/medium/461cName: MINERAL MEDIUM WITH O-NITROPHENOL (DSMZ Medium 461c) Composition: Na2HPO4 x 2 H2O 1.15308 g/l MgSO4 x 7 H2O 0.397614 g/l NH4Cl 0.238569 g/l KH2PO4 0.198807 g/l 2-Nitrophenol 0.1 g/l NaCl 0.0397614 g/l CaCl2 0.00795229 g/l MnSO4 0.00795229 g/l HCl 0.00198807 g/l FeCl2 x 4 H2O 0.00119284 g/l alpha-lipoic acid 0.000198807 g/l Thiamine-HCl x 2 H2O 0.000198807 g/l p-Aminobenzoic acid 0.000198807 g/l Riboflavin 0.000198807 g/l Pantothenic acid 0.000198807 g/l Vitamin B12 0.000198807 g/l CoCl2 x 6 H2O 0.000151093 g/l Nicotine amide 9.94036e-05 g/l Nicotinic acid 9.94036e-05 g/l Folic acid 7.95229e-05 g/l Biotin 7.95229e-05 g/l MnCl2 x 4 H2O 7.95229e-05 g/l ZnCl2 5.5666e-05 g/l Pyridoxamine hydrochloride 3.97614e-05 g/l Na2MoO4 x 2 H2O 2.86282e-05 g/l NiCl2 x 6 H2O 1.90855e-05 g/l H3BO3 4.77137e-06 g/l CuCl2 x 2 H2O 1.59046e-06 g/l Phosphate buffer Distilled water
2625CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

  • @ref: 2625
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

compound production

  • @ref: 2625
  • compound: nitrophenol oxygenase

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
2625+-------+++---++-++++

Safety information

risk assessment

  • @ref: 2625
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

External links

@ref: 2625

culture collection no.: DSM 6376

straininfo link

  • @ref: 82308
  • straininfo: 48170

Reference

@idauthorscataloguedoi/urltitle
2625Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6376)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6376
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68369Automatically annotated from API 20NE
82308Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48170.1StrainInfo: A central database for resolving microbial strain identifiers