Strain identifier
BacDive ID: 130968
Type strain:
Species: Limosilactobacillus reuteri
Strain Designation: I49
Strain history: <- B. Stecher, Max von Pettenkofer-Inst., Munich; I49
NCBI tax ID(s): 1598 (species)
General
@ref: 22260
BacDive-ID: 130968
DSM-Number: 32035
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Limosilactobacillus reuteri I49 is a microaerophile, mesophilic bacterium that was isolated from C57BL/6J wildtype mouse.
NCBI tax id
- NCBI tax id: 1598
- Matching level: species
strain history
- @ref: 22260
- history: <- B. Stecher, Max von Pettenkofer-Inst., Munich; I49
doi: 10.13145/bacdive130968.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Limosilactobacillus
- species: Limosilactobacillus reuteri
- full scientific name: Limosilactobacillus reuteri (Kandler et al. 1982) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus reuteri
@ref: 22260
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Limosilactobacillus
species: Limosilactobacillus reuteri
full scientific name: Limosilactobacillus reuteri (Kandler et al. 1982) Zheng et al. 2020
strain designation: I49
type strain: no
Morphology
colony morphology
- @ref: 22260
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 22260
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 22260
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 22260
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
- @ref: 22260
- sample type: C57BL/6J wildtype mouse
- geographic location: Zurich
- country: Switzerland
- origin.country: CHE
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Mammals
- Cat3: #Muridae (Mouse/Rat)
taxonmaps
- @ref: 69479
- File name: preview.99_581.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_369;97_416;98_475;99_581&stattab=map
- Last taxonomy: Limosilactobacillus reuteri
- 16S sequence: KR364776
- Sequence Identity:
- Total samples: 169334
- soil counts: 4867
- aquatic counts: 7596
- animal counts: 154945
- plant counts: 1926
Safety information
risk assessment
- @ref: 22260
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22260
- description: Lactobacillus reuteri strain I49 16S ribosomal RNA gene, partial sequence
- accession: KR364776
- length: 1560
- database: ena
- NCBI tax ID: 1598
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Limosilactobacillus reuteri I49 | GCA_001688685 | complete | ncbi | 1598 |
66792 | Limosilactobacillus reuteri I49 | GCA_016697045 | chromosome | ncbi | 1598 |
66792 | Limosilactobacillus reuteri I49 | GCA_002221655 | contig | ncbi | 1598 |
66792 | Limosilactobacillus reuteri I49 | 2718217763 | complete | img | 1598 |
66792 | Limosilactobacillus reuteri I49 | 2902505161 | draft | img | 1598 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 98.626 | no |
flagellated | no | 98.626 | no |
gram-positive | yes | 97.007 | no |
gram-positive | yes | 97.007 | no |
anaerobic | no | 82.343 | yes |
anaerobic | no | 82.343 | yes |
halophile | yes | 88.37 | no |
halophile | yes | 88.37 | no |
spore-forming | no | 94.817 | no |
spore-forming | no | 94.817 | no |
glucose-util | yes | 88.529 | no |
glucose-util | yes | 88.529 | no |
aerobic | no | 95.998 | yes |
aerobic | no | 95.998 | yes |
thermophile | no | 99.206 | no |
thermophile | no | 99.206 | no |
glucose-ferment | yes | 89.831 | no |
glucose-ferment | yes | 89.831 | no |
motile | no | 96.226 | no |
motile | no | 96.226 | no |
External links
@ref: 22260
culture collection no.: DSM 32035
straininfo link
- @ref: 89445
- straininfo: 402237
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22260 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-32035 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 32035) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
89445 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402237.1 |