Strain identifier

BacDive ID: 130968

Type strain: No

Species: Limosilactobacillus reuteri

Strain Designation: I49

Strain history: <- B. Stecher, Max von Pettenkofer-Inst., Munich; I49

NCBI tax ID(s): 1598 (species)

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General

@ref: 22260

BacDive-ID: 130968

DSM-Number: 32035

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Limosilactobacillus reuteri I49 is a microaerophile, mesophilic bacterium that was isolated from C57BL/6J wildtype mouse.

NCBI tax id

  • NCBI tax id: 1598
  • Matching level: species

strain history

  • @ref: 22260
  • history: <- B. Stecher, Max von Pettenkofer-Inst., Munich; I49

doi: 10.13145/bacdive130968.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Limosilactobacillus
  • species: Limosilactobacillus reuteri
  • full scientific name: Limosilactobacillus reuteri (Kandler et al. 1982) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus reuteri

@ref: 22260

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Limosilactobacillus

species: Limosilactobacillus reuteri

full scientific name: Limosilactobacillus reuteri (Kandler et al. 1982) Zheng et al. 2020

strain designation: I49

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
125438no90
12543892.582positive

colony morphology

  • @ref: 22260
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 22260
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

  • @ref: 22260
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
22260microaerophile
125439microaerophile98

Isolation, sampling and environmental information

isolation

  • @ref: 22260
  • sample type: C57BL/6J wildtype mouse
  • geographic location: Zurich
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Muridae (Mouse/Rat)

taxonmaps

  • @ref: 69479
  • File name: preview.99_581.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_369;97_416;98_475;99_581&stattab=map
  • Last taxonomy: Limosilactobacillus reuteri
  • 16S sequence: KR364776
  • Sequence Identity:
  • Total samples: 169334
  • soil counts: 4867
  • aquatic counts: 7596
  • animal counts: 154945
  • plant counts: 1926

Safety information

risk assessment

  • @ref: 22260
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22260
  • description: Limosilactobacillus reuteri strain I49 16S ribosomal RNA gene, partial sequence
  • accession: KR364776
  • length: 1560
  • database: nuccore
  • NCBI tax ID: 1598

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Limosilactobacillus reuteri I49GCA_001688685completencbi1598
66792Limosilactobacillus reuteri I49GCA_016697045chromosomencbi1598
66792Limosilactobacillus reuteri I49GCA_002221655contigncbi1598
66792Limosilactobacillus reuteri I492718217763completeimg1598
66792Limosilactobacillus reuteri I492902505161draftimg1598

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes92.582no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no83.879yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no92.803yes
125438spore-formingspore-formingAbility to form endo- or exosporesno89.656no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno97.375yes
125438motile2+flagellatedAbility to perform flagellated movementno90no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno86
125439BacteriaNetmotilityAbility to perform movementno82
125439BacteriaNetgram_stainReaction to gram-stainingpositive88.4
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthmicroaerophile98

External links

@ref: 22260

culture collection no.: DSM 32035

straininfo link

  • @ref: 89445
  • straininfo: 402237

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22260Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-32035Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 32035)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89445Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402237.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG