Strain identifier

BacDive ID: 130939

Type strain: Yes

Species: Enterobacter hormaechei subsp. hoffmannii

Strain Designation: EN-114

Strain history: <- H. Hoffmann, Max von Pettenkofer-Inst., Munich; EN-114

NCBI tax ID(s): 1812934 (subspecies)

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General

@ref: 22231

BacDive-ID: 130939

DSM-Number: 14563

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative

description: Enterobacter hormaechei subsp. hoffmannii EN-114 is a Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 1812934
  • Matching level: subspecies

strain history

  • @ref: 22231
  • history: <- H. Hoffmann, Max von Pettenkofer-Inst., Munich; EN-114

doi: 10.13145/bacdive130939.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter hormaechei subsp. hoffmannii
  • full scientific name: Enterobacter hormaechei subsp. hoffmannii Sutton et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Enterobacter hoffmannii

@ref: 22231

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter hormaechei subsp. hoffmannii

full scientific name: Enterobacter hormaechei subsp. hoffmannii Sutton et al. 2018

strain designation: EN-114

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.5

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22231TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
22231COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 22231
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
22231++-++----++++-++++++-

Isolation, sampling and environmental information

isolation

  • @ref: 22231
  • geographic location: Bavaria
  • country: Germany
  • origin.country: DEU
  • continent: Europe

Safety information

risk assessment

  • @ref: 22231
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 124043
  • description: Enterobacter hormaechei subsp. hoffmannii strain DSM 14563 16S ribosomal RNA gene, partial sequence.
  • accession: OP818073
  • length: 1404
  • database: nuccore
  • NCBI tax ID: 1812934

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterobacter hormaechei subsp. hoffmannii DSM 14563GCA_001729745completencbi1812934
66792Enterobacter cloacae complex 'Hoffmann cluster III' strain DSM 145631812934.3completepatric1812934
66792Enterobacter cloacae complex 'Hoffmann cluster III' strain DSM 145631812934.10plasmidpatric1812934
66792Enterobacter hormaechei hoffmannii DSM 145632718217835completeimg1812934

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno99.5no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.866no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no61.99no
69480spore-formingspore-formingAbility to form endo- or exosporesno87.637no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno99.5no
69480flagellatedmotile2+Ability to perform flagellated movementyes79.786no

External links

@ref: 22231

culture collection no.: DSM 14563, LMG 30171

straininfo link

  • @ref: 89416
  • straininfo: 397845

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22231Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-14563Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14563)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
89416Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397845.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy