Strain identifier

BacDive ID: 130928

Type strain: No

Species: Paeniclostridium sordellii

Strain Designation: MJJO609-3-1

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; MJJO609-3-1

NCBI tax ID(s): 1505 (species)

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General

@ref: 22220

BacDive-ID: 130928

DSM-Number: 29974

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, rod-shaped, human pathogen

description: Paeniclostridium sordellii MJJO609-3-1 is an anaerobe, spore-forming, mesophilic human pathogen that was isolated from wild mouse.

NCBI tax id

  • NCBI tax id: 1505
  • Matching level: species

strain history

  • @ref: 22220
  • history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; MJJO609-3-1

doi: 10.13145/bacdive130928.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Paeniclostridium
  • species: Paeniclostridium sordellii
  • full scientific name: Paeniclostridium sordellii (Hall and Scott 1927) Sasi Jyothsna et al. 2016

  • synonyms

    @refsynonym
    20215Clostridium sordellii
    20215Bacillus sordelli

@ref: 22220

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Paeniclostridium

species: Paeniclostridium sordellii

full scientific name: Paeniclostridium sordellii (Hall and Scott 1927) Sasi Jyothsna et al. 2016

strain designation: MJJO609-3-1

type strain: no

Morphology

cell morphology

@refcell shapegram stain
68367rod-shaped
68367positive

colony morphology

  • @ref: 22220
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22220FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)yeshttps://mediadive.dsmz.de/medium/1203Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water
22220WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 22220
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 22220
  • oxygen tolerance: anaerobe

spore formation

  • @ref: 68367
  • spore formation: yes

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose-builds acid from
683676731melezitose-builds acid from
6836716024D-mannose-builds acid from
6836717057cellobiose-builds acid from
6836717754glycerol-builds acid from
683674853esculin+hydrolysis
683675291gelatin+hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose-builds acid from
6836717814salicin-builds acid from
6836717306maltose+builds acid from
6836717992sucrose-builds acid from
6836717716lactose-builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose+builds acid from
6836716199urea-hydrolysis
6836727897tryptophan+energy source

metabolite production

  • @ref: 68367
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68367
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68367catalase+1.11.1.6
68367beta-glucosidase+3.2.1.21
68367gelatinase+
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRECATSPORGRAMCOCC
22220+-+---+---++--------
22220+-+---+---++--------+++-

Isolation, sampling and environmental information

isolation

  • @ref: 22220
  • sample type: wild mouse
  • geographic location: Freising
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Muridae (Mouse/Rat)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1682.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2;96_337;97_376;98_1330;99_1682&stattab=map
  • Last taxonomy: Paeniclostridium sordellii
  • 16S sequence: KR364762
  • Sequence Identity:
  • Total samples: 46616
  • soil counts: 4480
  • aquatic counts: 4522
  • animal counts: 35570
  • plant counts: 2044

Safety information

risk assessment

  • @ref: 22220
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22220
  • description: Clostridium sordelli strain MJJ0609-3-1 16S ribosomal RNA gene, partial sequence
  • accession: KR364762
  • length: 1437
  • database: ena
  • NCBI tax ID: 1796621

Genome sequences

  • @ref: 66792
  • description: Paeniclostridium sordellii DSM 29974
  • accession: GCA_024622135
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1505

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno63.259no
gram-positiveyes91.404yes
anaerobicyes97.838no
aerobicno95.585yes
halophileno86.683no
spore-formingyes93.439yes
motileyes78.87no
glucose-fermentyes71.366no
thermophileno98.179yes
glucose-utilyes88.924no

External links

@ref: 22220

culture collection no.: DSM 29974

straininfo link

  • @ref: 89406
  • straininfo: 398291

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22220Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29974Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29974)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68367Automatically annotated from API 20A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89406Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398291.1