Strain identifier
BacDive ID: 130925
Type strain: 
Species: Clostridium perfringens
Strain Designation: D10
Strain history: CIP <- 2016, CCUG <- 2015, NCTC, Julie Russell
NCBI tax ID(s): 1502 (species)
version 8.1 (current version)
General
@ref: 22217
BacDive-ID: 130925
DSM-Number: 100947
keywords: genome sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive, human pathogen
description: Clostridium perfringens D10 is an anaerobe, spore-forming, mesophilic human pathogen that was isolated from patient/food.
NCBI tax id
- NCBI tax id: 1502
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22217 | <- S. Alexander, NCTC <- K.A. Mooijman, RIVM |
| 121679 | CIP <- 2016, CCUG <- 2015, NCTC, Julie Russell |
doi: 10.13145/bacdive130925.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium perfringens
- full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus perfringens
@ref: 22217
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium perfringens
full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937
strain designation: D10
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 69480 | positive | 100 | ||
| 121679 | positive | rod-shaped | no |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22217 | CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) | yes | https://mediadive.dsmz.de/medium/110 | Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water |
| 121679 | CIP Medium 20 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20 |
culture temp
- @ref: 22217
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 22217 | anaerobe | |
| 69480 | anaerobe | 98.991 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 22217 | patient/food |
| 121679 | Human, Food |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Food |
| #Infection | #Patient |
Safety information
risk assessment
| @ref | pathogenicity human | pathogenicity animal | biosafety level | biosafety level comment |
|---|---|---|---|---|
| 22217 | yes | yes | 2 | Risk group (German classification) |
| 121679 | 2 | Risk group (French classification) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium perfringens NCTC13170 | GCA_900475545 | complete | ncbi | 1502 |
| 66792 | Clostridium perfringens strain NCTC13170 | 1502.467 | complete | patric | 1502 |
| 66792 | Clostridium perfringens NCTC 13170 | 2875113875 | complete | img | 1502 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| flagellated | no | 92.302 | no |
| gram-positive | yes | 92.802 | no |
| anaerobic | yes | 97.74 | no |
| aerobic | no | 96.133 | yes |
| halophile | no | 75.716 | no |
| spore-forming | yes | 91.067 | no |
| thermophile | no | 99.238 | yes |
| glucose-util | yes | 90.703 | no |
| motile | no | 79.606 | no |
| glucose-ferment | yes | 76.474 | no |
External links
@ref: 22217
culture collection no.: DSM 100947, NCTC 13170, WDCM 00201, CIP 111239, CCUG 67301
straininfo link
- @ref: 89405
- straininfo: 400302
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22217 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100947 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100947) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89405 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400302.1 | |
| 121679 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111239 | Collection of Institut Pasteur (CIP 111239) |