Archive BacDiveID:10.13145/bacdive130912.20230509.8.1

Strain identifier

BacDive ID: 130912

Type strain:

Species: Eubacterium sp.

Strain Designation: HM-766

Strain history: <- M. Sizova, Northeastern Univ., Boston, USA; AS15

NCBI tax ID(s): 142586 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 22204

BacDive-ID: 130912

DSM-Number: 28702

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Eubacterium sp. HM-766 is an anaerobe, mesophilic bacterium that was isolated from healthy human dental plague.

NCBI tax id

NCBI tax id: 142586
Matching level: species

strain history

@ref: 22204
history: <- M. Sizova, Northeastern Univ., Boston, USA; AS15

doi: 10.13145/bacdive130912.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Eubacteriaceae
genus: Eubacterium
species: Eubacterium sp.
full scientific name: Eubacterium Prévot 1938 (Approved Lists 1980)

@ref: 22204

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Eubacteriaceae

genus: Eubacterium

species: Eubacterium sp.

full scientific name: Eubacterium sp.

strain designation: HM-766

type strain: no

Culture and growth conditions

culture medium

@ref: 22204
name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
growth: yes
link: https://mediadive.dsmz.de/medium/104
composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

@ref: 22204
growth: positive
type: growth
temperature: 37
range: mesophilic

Physiology and metabolism

oxygen tolerance

@ref: 22204
oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@ref: 22204
sample type: healthy human dental plague
geographic location: MA, Boston
country: USA
origin.country: USA
continent: North America

isolation source categories

Cat1	Cat2	Cat3
#Host	#Human
#Host Body-Site	#Oral cavity and airways	#Tooth
#Host Body Product	#Oral cavity and Airways	#Dental plaque

taxonmaps

@ref: 69479
File name: preview.99_2734.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_345;96_1455;97_1736;98_2121;99_2734&stattab=map
Last taxonomy: [Eubacterium] yurii subclade
16S sequence: HQ616364
Sequence Identity:
Total samples: 21758
soil counts: 250
aquatic counts: 371
animal counts: 21034
plant counts: 103

Sequence information

16S sequences

@ref: 22204
description: Peptostreptococcaceae bacterium AS15 16S ribosomal RNA gene, partial sequence
accession: HQ616364
length: 1380
database: ena
NCBI tax ID: 936556

GC content

@ref: 22204
GC-content: 32.24

External links

@ref: 22204

culture collection no.: DSM 28702, AS 15

straininfo link

@ref: 89392
straininfo: 407304

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
22204	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-28702	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28702)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
89392	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID407304.1