Strain identifier

BacDive ID: 130882

Type strain: No

Species: Parabacteroides distasonis

Strain Designation: SAB-131-CoC-3

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; SAB-131-CoC-3

NCBI tax ID(s): 823 (species)

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General

@ref: 22191

BacDive-ID: 130882

DSM-Number: 29491

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative

description: Parabacteroides distasonis SAB-131-CoC-3 is an anaerobe, Gram-negative bacterium that was isolated from colon content; wildtype C57BL/6 mouse.

NCBI tax id

  • NCBI tax id: 823
  • Matching level: species

strain history

  • @ref: 22191
  • history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; SAB-131-CoC-3

doi: 10.13145/bacdive130882.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Tannerellaceae
  • genus: Parabacteroides
  • species: Parabacteroides distasonis
  • full scientific name: Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006

  • synonyms

    • @ref: 20215
    • synonym: Bacteroides distasonis

@ref: 22191

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Tannerellaceae

genus: Parabacteroides

species: Parabacteroides distasonis

full scientific name: Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006 emend. Hahnke et al. 2016

strain designation: SAB-131-CoC-3

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 91.271

colony morphology

  • @ref: 22191
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22191COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
22191WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 22191
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 22191
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380beta-glucosidase+3.2.1.21
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
22191--+--+/-+--+------++-+++-+++++/-+/-
22191--+++/-+++-+++----++-+++-++++++
22191--+++/-+++-+++----++-+++-++++++

Isolation, sampling and environmental information

isolation

  • @ref: 22191
  • sample type: colon content; wildtype C57BL/6 mouse
  • geographic location: Freising
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract#Large intestine

taxonmaps

  • @ref: 69479
  • File name: preview.99_1830.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_126;96_368;97_415;98_474;99_1830&stattab=map
  • Last taxonomy: Parabacteroides distasonis subclade
  • 16S sequence: KR364782
  • Sequence Identity:
  • Total samples: 75519
  • soil counts: 356
  • aquatic counts: 1082
  • animal counts: 73897
  • plant counts: 184

Safety information

risk assessment

  • @ref: 22191
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22191
  • description: Parabacteroides distasonis strain SAB-131-CoC-3 16S ribosomal RNA gene, partial sequence
  • accession: KR364782
  • length: 1484
  • database: nuccore
  • NCBI tax ID: 823

Genome sequences

  • @ref: 66792
  • description: Parabacteroides distasonis DSM 29491
  • accession: GCA_024622105
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 823

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno91.271no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes85.666no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no91.054yes
69480spore-formingspore-formingAbility to form endo- or exosporesno88.542no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno92.69no
69480flagellatedmotile2+Ability to perform flagellated movementno87.5no

External links

@ref: 22191

culture collection no.: DSM 29491

straininfo link

  • @ref: 89365
  • straininfo: 402959

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22191Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29491Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29491)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
89365Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402959.1