Strain identifier
BacDive ID: 130864
Type strain: 
Species: Alkalihalophilus lindianensis
Strain Designation: 12-3
Strain history: <- Z. Wang, Beijing Forestry Univ., China; 12-3
NCBI tax ID(s): 1630542 (species)
version 8.1 (current version)
General
@ref: 22173
BacDive-ID: 130864
DSM-Number: 26864
keywords: 16S sequence, Bacteria, mesophilic
description: Alkalihalophilus lindianensis 12-3 is a mesophilic bacterium that was isolated from saline and alkaline soil.
NCBI tax id
- NCBI tax id: 1630542
- Matching level: species
strain history
- @ref: 22173
- history: <- Z. Wang, Beijing Forestry Univ., China; 12-3
doi: 10.13145/bacdive130864.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Alkalihalophilus
- species: Alkalihalophilus lindianensis
- full scientific name: Alkalihalophilus lindianensis (Dou et al. 2016) Joshi et al. 2022
synonyms
@ref synonym 20215 Alkalihalobacillus lindianensis 20215 Bacillus lindianensis
@ref: 22173
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Alkalihalobacillus
species: Alkalihalobacillus lindianensis
full scientific name: Alkalihalobacillus lindianensis (Dou et al. 2016) Patel and Gupta 2020
strain designation: 12-3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22173
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 30.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 22173
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22173
- sample type: saline and alkaline soil
- geographic location: Heilongjiang Province, Lindian county, Daqing City
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Alkaline | |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_18415.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2523;97_3081;98_3867;99_18415&stattab=map
- Last taxonomy: Alkalihalobacillus lindianensis
- 16S sequence: KP954690
- Sequence Identity:
- Total samples: 101
- soil counts: 30
- aquatic counts: 50
- animal counts: 10
- plant counts: 11
Safety information
risk assessment
- @ref: 22173
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22173
- description: Bacillus lindianensis strain 12-3 16S ribosomal RNA gene, partial sequence
- accession: KP954690
- length: 1516
- database: ena
- NCBI tax ID: 1630542
GC content
- @ref: 22173
- GC-content: 42.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 22173
culture collection no.: DSM 26864, CGMCC 1.12717
straininfo link
- @ref: 89347
- straininfo: 403148
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26604103 | Bacillus lindianensis sp. nov., a novel alkaliphilic and moderately halotolerant bacterium isolated from saline and alkaline soils. | Dou G, Liu H, He W, Ma Y | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0616-y | 2015 | Bacillus/*classification/genetics/*isolation & purification/metabolism, Base Sequence, Cell Wall/metabolism, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/metabolism, Fatty Acids/metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/metabolism, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism/pharmacology, Soil/chemistry, *Soil Microbiology | Metabolism |
| Phylogeny | 28905696 | Paralkalibacillus indicireducens gen., nov., sp. nov., an indigo-reducing obligate alkaliphile isolated from indigo fermentation liquor used for dyeing. | Hirota K, Nishita M, Matsuyama H, Yumoto I | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002248 | 2017 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Coloring Agents, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Fermentation, *Indigo Carmine, Japan, Nucleic Acid Hybridization, *Phylogeny, Polygonum, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22173 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26864 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26864) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89347 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403148.1 |