Strain identifier
BacDive ID: 130815
Type strain: 
Species: Thiolapillus brandeum
Strain history: T. Nunoura; JAMSTEC, Japan; Hiromi 1.
NCBI tax ID(s): 1076588 (species)
version 9 (current version)
General
@ref: 22140
BacDive-ID: 130815
DSM-Number: 23672
keywords: genome sequence, 16S sequence, Bacteria
description: Thiolapillus brandeum DSM 23672 is a bacterium that was isolated from sulfide chimney structures covered by polychaete colonies.
NCBI tax id
- NCBI tax id: 1076588
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22140 | <- T. Nunoura, Japan Agency for Marine-Earth Sci. and Technol. (JAMSTEC), Yokosuka; HIROMI1 <- H. Kazama |
| 67770 | T. Nunoura; JAMSTEC, Japan; Hiromi 1. |
doi: 10.13145/bacdive130815.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Sedimenticolaceae
- genus: Thiolapillus
- species: Thiolapillus brandeum
- full scientific name: Thiolapillus brandeum Nunoura et al. 2015
@ref: 22140
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Gammaproteobacteria, not assigned to family
genus: Thiolapillus
species: Thiolapillus brandeum
full scientific name: Thiolapillus brandeum Nunoura et al. 2015
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22140
- name: HYDROGENIVIRGA OKINAWENSIS MEDIUM (DSMZ Medium 1131)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1131
- composition: Name: HYDROGENIVIRGA OKINAWENSIS MEDIUM (DSMZ Medium 1131) Composition: MgCl2 x 6 H2O 4.13861 g/l Sulfur 2.9703 g/l NaHCO3 0.990099 g/l NaNO3 0.990099 g/l NH4Cl 0.49505 g/l KCl 0.326733 g/l K2HPO4 0.138614 g/l MgSO4 x 7 H2O 0.029703 g/l Nitrilotriacetic acid 0.0148515 g/l NaCl 0.00990099 g/l MnSO4 x n H2O 0.00495049 g/l Na2SeO3 x 5 H2O 0.000990099 g/l NiCl2 x 6 H2O 0.000990099 g/l FeSO4 x 7 H2O 0.000990099 g/l ZnSO4 x 7 H2O 0.000990099 g/l CaCl2 x 2 H2O 0.000990099 g/l CoSO4 x 7 H2O 0.000990099 g/l CuSO4 x 5 H2O 9.90099e-05 g/l Pyridoxine hydrochloride 9.90099e-05 g/l AlK(SO4)2 9.90099e-05 g/l H3BO3 9.90099e-05 g/l Na2MoO4 x 2 H2O 9.90099e-05 g/l D-Calcium pantothenate 4.95049e-05 g/l Nicotinic acid 4.95049e-05 g/l Riboflavin 4.95049e-05 g/l Thiamine-HCl x 2 H2O 4.95049e-05 g/l Lipoic acid 4.95049e-05 g/l p-Aminobenzoic acid 4.95049e-05 g/l Folic acid 1.9802e-05 g/l Biotin 1.9802e-05 g/l Vitamin B12 9.90099e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 22140 | positive | growth | 30-40 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 22140 | sulfide chimney structures covered by polychaete colonies | Okinawa Trough, Minami-Ensei Knoll hydrothermal active field, no. 7 vent (28°23.29N, 127°38.37E) | Japan | JPN | Asia | 28.3882 | 127.64 |
| 67770 | Chimney structure at the Minami-Ensei Knoll hydrothermal field, Okinawa Trough |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Host | #Invertebrates (Other) | #Annelida |
| #Condition | #Sulfuric |
taxonmaps
- @ref: 69479
- File name: preview.99_4719.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_159;96_2340;97_2847;98_3539;99_4719&stattab=map
- Last taxonomy: Thiolapillus brandeum subclade
- 16S sequence: AP012273
- Sequence Identity:
- Total samples: 1094
- soil counts: 92
- aquatic counts: 909
- animal counts: 28
- plant counts: 65
Safety information
risk assessment
- @ref: 22140
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Thiolapillus brandeum DNA, complete genome
- accession: AP012273
- length: 3129662
- database: nuccore
- NCBI tax ID: 1076588
Genome sequences
- @ref: 67770
- description: Thiolapillus brandeum Hiromi 1
- accession: GCA_000828615
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1076588
GC content
| @ref | GC-content | method |
|---|---|---|
| 22140 | 56.3 | sequence analysis |
| 67770 | 56.3 | genome sequence analysis |
External links
@ref: 22140
culture collection no.: DSM 23672, JCM 15507, Hiromi 1, Hiromi HIROMI1
straininfo link
- @ref: 89303
- straininfo: 406644
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22140 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23672 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23672) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 89303 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406644.1 |