Strain identifier

BacDive ID: 130801

Type strain: Yes

Species: Marinactinospora endophytica

Strain history: <- Wenjun Li

NCBI tax ID(s): 1634059 (species)

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General

@ref: 21860

BacDive-ID: 130801

DSM-Number: 46799

keywords: 16S sequence, Bacteria, aerobe, mesophilic

description: Marinactinospora endophytica DSM 46799 is an aerobe, mesophilic bacterium that was isolated from healthy stem of the traditional Chinese medicinal plant Salsola ferganica Drob.

NCBI tax id

  • NCBI tax id: 1634059
  • Matching level: species

strain history

@refhistory
21860<- W.-J. Li, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 690053 <- H.-F. Wang
67770KCTC 29664 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 690053.
67771<- Wenjun Li

doi: 10.13145/bacdive130801.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Nocardiopsidaceae
  • genus: Marinactinospora
  • species: Marinactinospora endophytica
  • full scientific name: Marinactinospora endophytica Liu et al. 2015

@ref: 21860

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiopsaceae

genus: Marinactinospora

species: Marinactinospora endophytica

full scientific name: Marinactinospora endophytica Liu et al. 2015

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21860GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
21860TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21860positivegrowth28mesophilic
67770positivegrowth28mesophilic
67771positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

observation

  • @ref: 67770
  • observation: quinones: MK-11(H8), MK-11(H10), MK-10(H10), MK-10(H8)

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
21860healthy stem of the traditional Chinese medicinal plant Salsola ferganica DrobSalsola ferganicaXinjiang province, Shihezi cityChinaCHNAsia
67770Stems of Salsola ferganica Drob, a traditional Chinese medicinal plantSalsola ferganicaShihezi City, Xinjiang Province, north-westChinaCHNAsia
67771From healthy stems of Salsola ferganica Drob(Plant)ChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Stem (Branch)

taxonmaps

  • @ref: 69479
  • File name: preview.99_7117.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_3336;97_4093;98_5235;99_7117&stattab=map
  • Last taxonomy: Marinactinospora
  • 16S sequence: KP277099
  • Sequence Identity:
  • Total samples: 361
  • soil counts: 219
  • aquatic counts: 18
  • animal counts: 52
  • plant counts: 72

Safety information

risk assessment

  • @ref: 21860
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21860
  • description: Marinactinospora endophytica strain YIM 690053 16S ribosomal RNA gene, partial sequence
  • accession: KP277099
  • length: 1525
  • database: ena
  • NCBI tax ID: 1634059

GC content

  • @ref: 21860
  • GC-content: 70.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21860

culture collection no.: DSM 46799, KCTC 29664, YIM 690053, JCM 31490, JCM 30293

straininfo link

  • @ref: 89289
  • straininfo: 398884

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25903844Marinactinospora endophytica sp. nov., isolated from a medicinal plant.Liu MJ, Khieu TN, Gao R, Hozzein WN, Wang HF, Yang W, Nimaichand S, Xiong Z, Duan YQ, Li WJAntonie Van Leeuwenhoek10.1007/s10482-015-0451-12015Actinobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Hydrogen-Ion Concentration, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Stems/microbiology, Plants, Medicinal/*microbiology, RNA, Ribosomal, 16S/genetics, Salsola/microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureGenetics
Phylogeny30298376Marinactinospora rubrisoli sp. nov., isolated from red soil.Huang B, Cheng K, Zhang L, Huang Y, Liu CArch Microbiol10.1007/s00203-018-1583-22018Actinomycetales/chemistry/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/chemistry, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/analysis, Soil, *Soil MicrobiologyEnzymology
Phylogeny31310190Marinitenerispora sediminis gen. nov., sp. nov., a member of the family Nocardiopsaceae isolated from marine sediment.Ng ZY, Fang BZ, Li WJ, Tan GYAInt J Syst Evol Microbiol10.1099/ijsem.0.0035872019Actinomycetales/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genes, Bacterial, Geologic Sediments/*microbiology, Islands, Malaysia, Multilocus Sequence Typing, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21860Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46799Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46799)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89289Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398884.1