Strain identifier

BacDive ID: 130795

Type strain: No

Species: Gayadomonas joobiniege

Strain Designation: G7

Strain history: <- S. K. Hong, Myongji University, Appl. Molecular Microbiology Lab., Dept Biol. Science; G7 <- W.-J. Chi and S. K. Hong

NCBI tax ID(s): 1234606 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21854

BacDive-ID: 130795

DSM-Number: 25250

keywords: 16S sequence, genome sequence, Bacteria, mesophilic

description: Gayadomonas joobiniege G7 is a mesophilic bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1234606
  • Matching level: species

strain history: <- S. K. Hong, Myongji University, Appl. Molecular Microbiology Lab., Dept Biol. Science; G7 <- W.-J. Chi and S. K. Hong

doi: 10.13145/bacdive130795.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Gayadomonas
  • species: Gayadomonas joobiniege
  • full scientific name: Gayadomonas joobiniege Chi et al. 2013

@ref: 21854

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Clostridiales

family: Alteromonadaceae

genus: Gayadomonas

species: Gayadomonas joobiniege

full scientific name: Gayadomonas joobiniege Chi et al. 2013

strain designation: G7

type strain: no

Culture and growth conditions

culture medium

  • @ref: 21854
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 21854
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

compound production

  • @ref: 21854
  • compound: agarase

Isolation, sampling and environmental information

isolation

  • @ref: 21854
  • sample type: seawater
  • geographic location: Gaya Island
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Sequence information

16S sequences

  • @ref: 21854
  • description: Gayadomonas joobiniege G7 16S ribosomal RNA gene, partial sequence
  • accession: JF965427
  • length: 1436
  • database: ena
  • NCBI tax ID: 1046714

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Gayadomonas joobiniege G7 G7GCA_000300815contigncbi1046714
66792Gayadomonas joobiniege G71046714.5plasmidpatric1046714
66792Gayadomonas joobiniege G72547132174draftimg1046714

External links

@ref: 21854

culture collection no.: DSM 25250, ATCC BAA 2321, KCTC 23721

literature

  • topic: Phylogeny
  • Pubmed-ID: 23966020
  • title: Isolation and characterization of a novel agar-degrading marine bacterium, Gayadomonas joobiniege gen, nov, sp. nov., from the Southern Sea, Korea.
  • authors: Chi WJ, Park JS, Kwak MJ, Kim JF, Chang YK, Hong SK
  • journal: J Microbiol Biotechnol
  • DOI: 10.4014/jmb.1308.08007
  • year: 2013
  • mesh: Agar/*metabolism, Alteromonadaceae/*classification/genetics/isolation & purification/*metabolism, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrolysis, Microbial Sensitivity Tests, Microscopy, Electron, Transmission, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21854Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25250Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25250)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes