General

@ref: 21854

BacDive-ID: 130795

DSM-Number: 25250

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Gayadomonas joobiniege G7 is a mesophilic bacterium that was isolated from seawater.

NCBI tax id

• NCBI tax id: 1234606
• Matching level: species

strain history

• @ref: 21854
• history: <- S. K. Hong, Myongji University, Appl. Molecular Microbiology Lab., Dept Biol. Science; G7 <- W.-J. Chi and S. K. Hong

doi: 10.13145/bacdive130795.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Gammaproteobacteria
• order: Alteromonadales
• family: Alteromonadaceae
• genus: Gayadomonas
• species: Gayadomonas joobiniege
• full scientific name: Gayadomonas joobiniege Chi et al. 2013

@ref: 21854

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Clostridiales

family: Alteromonadaceae

genus: Gayadomonas

species: Gayadomonas joobiniege

full scientific name: Gayadomonas joobiniege Chi et al. 2013

strain designation: G7

type strain: no

Culture and growth conditions

culture medium

• @ref: 21854
• name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
• growth: yes
• link: https://mediadive.dsmz.de/medium/514
• composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

• @ref: 21854
• growth: positive
• type: growth
• temperature: 37
• range: mesophilic

Physiology and metabolism

compound production

• @ref: 21854
• compound: agarase

Isolation, sampling and environmental information

isolation

• @ref: 21854
• sample type: seawater
• geographic location: Gaya Island
• country: Republic of Korea
• origin.country: KOR
• continent: Asia

isolation source categories

• Cat1: #Environmental
• Cat2: #Aquatic
• Cat3: #Marine

taxonmaps

• @ref: 69479
• File name: preview.99_6299.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_255;96_2998;97_3685;98_4667;99_6299&stattab=map
• Last taxonomy: Gayadomonas joobiniege subclade
• 16S sequence: JF965427
• Sequence Identity:
• Total samples: 726
• soil counts: 13
• aquatic counts: 428
• animal counts: 273
• plant counts: 12

Sequence information

16S sequences

• @ref: 21854
• description: Gayadomonas joobiniege G7 16S ribosomal RNA gene, partial sequence
• accession: JF965427
• length: 1436
• database: ena
• NCBI tax ID: 1046714

Genome sequences

External links

@ref: 21854

culture collection no.: DSM 25250, ATCC BAA 2321, KCTC 23721

literature

• topic: Phylogeny
• Pubmed-ID: 23966020
• title: Isolation and characterization of a novel agar-degrading marine bacterium, Gayadomonas joobiniege gen, nov, sp. nov., from the Southern Sea, Korea.
• authors: Chi WJ, Park JS, Kwak MJ, Kim JF, Chang YK, Hong SK
• journal: J Microbiol Biotechnol
• DOI: 10.4014/jmb.1308.08007
• year: 2013
• mesh: Agar/*metabolism, Alteromonadaceae/*classification/genetics/isolation & purification/*metabolism, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrolysis, Microbial Sensitivity Tests, Microscopy, Electron, Transmission, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA
• topic2: Metabolism

Reference