Strain identifier
BacDive ID: 130788
Type strain: 
Species: Blastococcus fimeti
Strain Designation: G1S
Strain history: <- M. Eppard, isolat G1S, Universität Oldenburg
NCBI tax ID(s): 1873459 (species)
version 8.1 (current version)
General
@ref: 21847
BacDive-ID: 130788
DSM-Number: 44205
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Blastococcus fimeti G1S is a mesophilic, Gram-positive bacterium that was isolated from seepage water of a dumping ground.
NCBI tax id
- NCBI tax id: 1873459
- Matching level: species
strain history
- @ref: 21847
- history: <- M. Eppard, isolat G1S, Universität Oldenburg
doi: 10.13145/bacdive130788.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Geodermatophilales
- family: Geodermatophilaceae
- genus: Blastococcus
- species: Blastococcus fimeti
- full scientific name: Blastococcus fimeti Montero-Calasanz et al. 2023
@ref: 21847
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Geodermatophilaceae
genus: Blastococcus
species: Blastococcus sp.
full scientific name: Blastococcus sp.
strain designation: G1S
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 21847 | https://www.dsmz.de/microorganisms/photos/DSM_44205.jpg | Medium 714 28°C | © Leibniz-Institut DSMZ |
| 66793 | EM_DSM_44205_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44205_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44205_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44205_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44205_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 21847
- name: GEO-MEDIUM (DSMZ Medium 714)
- growth: yes
- link: https://mediadive.dsmz.de/medium/714
- composition: Name: GEO-MEDIUM (DSMZ Medium 714) Composition: Agar 15.0 g/l CaCO3 1.0 g/l Starch 1.0 g/l Glucose 1.0 g/l Yeast extract 1.0 g/l Distilled water
culture temp
- @ref: 21847
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.327
Isolation, sampling and environmental information
isolation
- @ref: 21847
- sample type: seepage water of a dumping ground
- geographic location: Vancouver
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Engineered | #Waste |
| #Environmental | #Aquatic |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Blastococcus sp. DSM 44205 | 1550233.7 | wgs | patric | 1550233 |
| 66792 | Blastococcus fimeti DSM 44205 | 2599185193 | draft | img | 1550233 |
| 66792 | Blastococcus fimeti DSM 44205 | GCA_900102115 | contig | ncbi | 1550233 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 83 | no |
| motile | yes | 61.761 | no |
| gram-positive | yes | 90.857 | no |
| anaerobic | no | 98.708 | no |
| aerobic | yes | 89.236 | no |
| halophile | no | 94.619 | no |
| spore-forming | no | 74.797 | no |
| thermophile | no | 99.258 | yes |
| glucose-util | yes | 83.884 | no |
| flagellated | no | 93.016 | no |
| glucose-ferment | no | 91.292 | no |
External links
@ref: 21847
culture collection no.: DSM 44205
straininfo link
- @ref: 89281
- straininfo: 407850
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21847 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44205 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44205) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66793 | Mukherjee et al. | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 10.1038/nbt.3886 | 35: 676-683 2017 | 28604660 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 89281 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407850.1 |