Strain identifier

BacDive ID: 130778

Type strain: Yes

Species: Lysobacter mobilis

Strain Designation: 9NM-14

Strain history: <- DSM

NCBI tax ID(s): 1141882 (species)

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General

@ref: 21645

BacDive-ID: 130778

DSM-Number: 27574

keywords: 16S sequence, Bacteria, aerobe

description: Lysobacter mobilis 9NM-14 is an aerobe bacterium that was isolated from lead-zinc ore sample from abandoned mine.

NCBI tax id

  • NCBI tax id: 1141882
  • Matching level: species

strain history

@refhistory
21645<- G. Feng, Guangdong Inst. Microbiology, Guangdong Academy Sci., China
67771<- DSM

doi: 10.13145/bacdive130778.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Lysobacter
  • species: Lysobacter mobilis
  • full scientific name: Lysobacter mobilis Yang et al. 2015

@ref: 21645

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacteraceae, not assigned to order

family: Lysobacteraceae

genus: Lysobacter

species: Lysobacter mobilis

full scientific name: Lysobacter mobilis Yang et al. 2015

strain designation: 9NM-14

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21645
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperature
21645positivegrowth28
67771positivegrowth28

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
21645------+--------------
21645------+--------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
21645lead-zinc ore sample from abandoned mineGuangdong Province, Meizhou (24° 21' 44'' N 116° 16' 34'' E)ChinaCHNAsia24.3622116.276
67771From lead-zinc ore sample from abandoned mineGuangdong ProvinceChinaCHNAsia24.3622116.276

isolation source categories

Cat1Cat2Cat3
#Engineered#Other#Mine
#Environmental#Terrestrial#Geologic

Safety information

risk assessment

  • @ref: 21645
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21645
  • description: Lysobacter mobilis strain 9NM-14 16S ribosomal RNA gene, partial sequence
  • accession: JQ608331
  • length: 1499
  • database: nuccore
  • NCBI tax ID: 1141882

GC content

  • @ref: 21645
  • GC-content: 70.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21645

culture collection no.: DSM 27574, CCTCC AB 2014273, GIMCC 1.659, KCTC 52627

straininfo link

  • @ref: 89274
  • straininfo: 399345

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25500457Lysobacter mobilis sp. nov., isolated from abandoned lead-zinc ore.Yang SZ, Feng GD, Zhu HH, Wang YHInt J Syst Evol Microbiol10.1099/ijs.0.0000262014Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lead, Lysobacter/*classification/genetics/isolation & purification, Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry, ZincGenetics
Phylogeny30906954Lysobacter helvus sp. nov. and Lysobacter xanthus sp. nov., isolated from Soil in South Korea.Kim I, Choi J, Chhetri G, Seo TAntonie Van Leeuwenhoek10.1007/s10482-019-01256-w2019Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Lysobacter/*classification/genetics/*isolation & purification/physiology, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome
Phylogeny31728699Lysobacter segetis sp. nov., Isolated from Soil.Ten LN, Jeon J, Elderiny NS, Kim MK, Lee SY, Jung HYCurr Microbiol10.1007/s00284-019-01801-w2019Bacterial Typing Techniques, Base Composition/genetics, DNA, Bacterial/genetics, Lysobacter/classification/*genetics/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil MicrobiologyMetabolism
Phylogeny31776587Lysobacter terrigena sp. nov., isolated from a Korean soil sample.Li W, Elderiny NS, Ten LN, Lee SY, Kim MK, Jung HYArch Microbiol10.1007/s00203-019-01776-z2019Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis/metabolism, Lysobacter/classification/genetics/*isolation & purification/metabolism, Phospholipids/analysis/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil MicrobiologyMetabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21645Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27574Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27574)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68369Automatically annotated from API 20NE
89274Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399345.1