Strain identifier

BacDive ID: 130727

Type strain: Yes

Species: Streptomyces vulcanius

Strain Designation: NEAU-C3

Strain history: <- C. Liu, School of Life Science, Harbin, China; NEAU-C3 <- F. Jia

NCBI tax ID(s): 1441876 (species)

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General

@ref: 21960

BacDive-ID: 130727

DSM-Number: 42139

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces vulcanius NEAU-C3 is a mesophilic bacterium that builds an aerial mycelium and was isolated from volcanic sediment.

NCBI tax id

  • NCBI tax id: 1441876
  • Matching level: species

strain history

  • @ref: 21960
  • history: <- C. Liu, School of Life Science, Harbin, China; NEAU-C3 <- F. Jia

doi: 10.13145/bacdive130727.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces vulcanius
  • full scientific name: Streptomyces vulcanius Jia et al. 2015

@ref: 21960

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces vulcanius

full scientific name: Streptomyces vulcanius

strain designation: NEAU-C3

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69350Grey beige (1019)ISP 6
69350Brown beige (1011)ISP 2
69350Ivory (1014), ochre yellow (1024)suter with tyrosine
69350Ivory (1014), ochre yellow (1024)suter without tyrosine
69350Mouse grey (7005)ISP 4
69350Ochre brown (8001), fawn brown (8007)ISP 3
69350Olive brown (8008), sepia brown (8014)ISP 7
69350Pale brown (8025)ISP 5

multicellular morphology

@refforms multicellular complexcomplex namemedium namecomplex color
69350noAerial myceliumISP 2
69350yesAerial myceliumISP 3Silk grey (7044)
69350noAerial myceliumISP 4
69350noAerial myceliumISP 5
69350noAerial myceliumISP 6
69350yesAerial myceliumISP 7Cream (9001)
69350noAerial myceliumsuter with tyrosine
69350noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69350noMelanin
69350yessoluble pigmentBrown beige,(1011), beige (1001), ochre yellow (1024)

multimedia

@refmultimedia contentcaptionintellectual property rights
21960https://www.dsmz.de/microorganisms/photos/DSM_42139.jpgMedium 65 28°C© Leibniz-Institut DSMZ
69350DSM_42139_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69350DSM_42139_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21960GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
21960ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
21960STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

  • @ref: 21960
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

halophily

  • @ref: 69350
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6935022599arabinose+growth
6935062968cellulose+/-growth
6935028757fructose+growth
6935017234glucose+growth
6935017268inositol+growth
6935037684mannose+growth
6935016634raffinose+growth
6935026546rhamnose+growth
6935017992sucrose+growth
6935018222xylose+growth
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase+3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69350--++-+--+-+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69350+++/--++/-+/-+-+++/-+-+++/-++

Isolation, sampling and environmental information

isolation

  • @ref: 21960
  • sample type: volcanic sediment
  • geographic location: Jilin Province, Tonghua, Longwan Crater Lake park (42°16'N, 126°13'E)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 42.2667
  • longitude: 126.217

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Sediment
#Environmental#Terrestrial#Volcanic

Sequence information

16S sequences

  • @ref: 21960
  • description: Streptomyces vulcanius strain NEAU-C3 16S ribosomal RNA gene, partial sequence
  • accession: KF956803
  • length: 1521
  • database: ena
  • NCBI tax ID: 1441876

GC content

  • @ref: 21960
  • GC-content: 72.4
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 21960

culture collection no.: DSM 42139, CGMCC 4.7177

literature

  • topic: Phylogeny
  • Pubmed-ID: 25294726
  • title: Streptomyces vulcanius sp. nov., a novel actinomycete isolated from volcanic sediment.
  • authors: Jia F, Liu C, Zhao J, Zhang Y, Li L, Zhou S, Shen Y, Wang X, Xiang W
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-014-0299-9
  • year: 2014
  • mesh: Bacterial Typing Techniques, Carbohydrates/analysis, Cell Wall/chemistry, China, Chromatography, High Pressure Liquid, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gas Chromatography-Mass Spectrometry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/chemistry/*classification/genetics/*isolation & purification, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21960Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42139Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42139)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69350Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%2042139.pdf