Strain identifier
BacDive ID: 130721
Type strain: 
Species: Streptomyces iconiensis
Strain Designation: BNT558
Strain history: <- N. Sahin, Ondokuz Mayis University,Turkey; BNT558 <- K. Guven
NCBI tax ID(s): 1384038 (species)
version 9.1 (current version)
General
@ref: 21954
BacDive-ID: 130721
DSM-Number: 42109
keywords: genome sequence, 16S sequence, Bacteria
description: Streptomyces iconiensis BNT558 is a bacterium that was isolated from soil from a salt lake.
NCBI tax id
- NCBI tax id: 1384038
- Matching level: species
strain history
- @ref: 21954
- history: <- N. Sahin, Ondokuz Mayis University,Turkey; BNT558 <- K. Guven
doi: 10.13145/bacdive130721.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces iconiensis
- full scientific name: Streptomyces iconiensis Tatar et al. 2014
@ref: 21954
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces iconiensis
full scientific name: Streptomyces iconiensis Tatar et al. 2014
strain designation: BNT558
type strain: yes
Morphology
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 21954 | https://www.dsmz.de/microorganisms/photos/DSM_42109.jpg | Medium 65 28°C | © Leibniz-Institut DSMZ |
| 21954 | https://www.dsmz.de/microorganisms/photos/DSM_42109.jpg | Medium 65 28°C | Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH |
Culture and growth conditions
culture medium
- @ref: 21954
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 21954
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 21954
- sample type: soil from a salt lake
- geographic location: Konya
- country: Turkey
- origin.country: TUR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 21954
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21954
- description: Streptomyces iconiensis strain BNT558 16S ribosomal RNA gene, partial sequence
- accession: KC959223
- length: 1473
- database: nuccore
- NCBI tax ID: 1384038
Genome sequences
- @ref: 66792
- description: Streptomyces iconiensis DSM 42109
- accession: GCA_028657195
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1384038
GC content
- @ref: 21954
- GC-content: 70.2
- method: fluorimetric
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 75.425 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 88.701 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 61.266 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 75.814 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.577 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 81 | no |
External links
@ref: 21954
culture collection no.: DSM 42109, KCTC 29198
straininfo link
- @ref: 89227
- straininfo: 403119
literature
- topic: Phylogeny
- Pubmed-ID: 24944339
- title: Streptomyces iconiensis sp. nov. and Streptomyces smyrnaeus sp. nov., two halotolerant actinomycetes isolated from a salt lake and saltern.
- authors: Tatar D, Guven K, Sproer C, Klenk HP, Sahin N
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.062216-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/microbiology, Lakes, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Streptomyces/*classification/genetics/isolation & purification, Turkey, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21954 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42109 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42109) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89227 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403119.1 |