Strain identifier

BacDive ID: 130721

Type strain: Yes

Species: Streptomyces iconiensis

Strain Designation: BNT558

Strain history: <- N. Sahin, Ondokuz Mayis University,Turkey; BNT558 <- K. Guven

NCBI tax ID(s): 1384038 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21954

BacDive-ID: 130721

DSM-Number: 42109

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces iconiensis BNT558 is a mesophilic bacterium that was isolated from soil from a salt lake.

NCBI tax id

  • NCBI tax id: 1384038
  • Matching level: species

strain history

  • @ref: 21954
  • history: <- N. Sahin, Ondokuz Mayis University,Turkey; BNT558 <- K. Guven

doi: 10.13145/bacdive130721.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces iconiensis
  • full scientific name: Streptomyces iconiensis Tatar et al. 2014

@ref: 21954

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces iconiensis

full scientific name: Streptomyces iconiensis Tatar et al. 2014

strain designation: BNT558

type strain: yes

Morphology

multimedia

@refmultimedia contentcaptionintellectual property rights
21954https://www.dsmz.de/microorganisms/photos/DSM_42109.jpgMedium 65 28°C© Leibniz-Institut DSMZ
21954https://www.dsmz.de/microorganisms/photos/DSM_42109.jpgMedium 65 28°CLeibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Culture and growth conditions

culture medium

  • @ref: 21954
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 21954
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 21954
  • sample type: soil from a salt lake
  • geographic location: Konya
  • country: Turkey
  • origin.country: TUR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Terrestrial#Soil
#Condition#Saline

Safety information

risk assessment

  • @ref: 21954
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21954
  • description: Streptomyces iconiensis strain BNT558 16S ribosomal RNA gene, partial sequence
  • accession: KC959223
  • length: 1473
  • database: ena
  • NCBI tax ID: 1384038

Genome sequences

  • @ref: 66792
  • description: Streptomyces iconiensis DSM 42109
  • accession: GCA_028657195
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1384038

GC content

  • @ref: 21954
  • GC-content: 70.2
  • method: fluorimetric

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno88.816no
flagellatedno95.946no
gram-positiveyes83.168no
anaerobicno98.763no
aerobicyes74.395no
halophileno75.106no
spore-formingyes78.029no
glucose-fermentno76.025no
thermophileno99.682yes
glucose-utilyes87.528no

External links

@ref: 21954

culture collection no.: DSM 42109, KCTC 29198

straininfo link

  • @ref: 89227
  • straininfo: 403119

literature

  • topic: Phylogeny
  • Pubmed-ID: 24944339
  • title: Streptomyces iconiensis sp. nov. and Streptomyces smyrnaeus sp. nov., two halotolerant actinomycetes isolated from a salt lake and saltern.
  • authors: Tatar D, Guven K, Sproer C, Klenk HP, Sahin N
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.062216-0
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/microbiology, Lakes, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Streptomyces/*classification/genetics/isolation & purification, Turkey, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21954Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42109Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42109)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
89227Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403119.1