Strain identifier

BacDive ID: 130713

Type strain: Yes

Species: Streptomyces lactacystinicus

Strain Designation: OM-6519

Strain history: S. ?mura OM-6519.

NCBI tax ID(s): 1470455 (species)

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General

@ref: 21946

BacDive-ID: 130713

DSM-Number: 42136

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces lactacystinicus OM-6519 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1470455
  • Matching level: species

strain history

@refhistory
21946<- A. Matsumoto, Kitasato University, Tokyo; OM-6519
67770S. ?mura OM-6519.

doi: 10.13145/bacdive130713.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces lactacystinicus
  • full scientific name: Streptomyces lactacystinicus Také et al. 2017

@ref: 21946

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces lactacystinicus

full scientific name: Streptomyces lactacystinicus Také et al. 2017

strain designation: OM-6519

type strain: yes

Morphology

multimedia

@refmultimedia contentcaptionintellectual property rights
21946https://www.dsmz.de/microorganisms/photos/DSM_42136.jpgMedium 65 28°C© Leibniz-Institut DSMZ
21946https://www.dsmz.de/microorganisms/photos/DSM_42136.jpgMedium 65 28°CLeibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21946GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
21946ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
21946STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21946positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

  • @ref: 21946
  • compound: lactacystin

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8)

metabolite production

  • @ref: 67770
  • Chebi-ID: 52722
  • metabolite: lactacystin
  • production: yes

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21946soilChiba prefecture, near lake at InbaJapanJPNAsia
67770Soil near lakeInba, Chiba Pref.JapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_208.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_148;97_159;98_177;99_208&stattab=map
  • Last taxonomy: Streptomycetaceae
  • 16S sequence: AB915215
  • Sequence Identity:
  • Total samples: 2039
  • soil counts: 1733
  • aquatic counts: 54
  • animal counts: 127
  • plant counts: 125

Safety information

risk assessment

  • @ref: 21946
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21946
  • description: Streptomyces lactacystinicus gene for 16S ribosomal RNA, partial sequence
  • accession: AB915215
  • length: 1482
  • database: ena
  • NCBI tax ID: 1470455

GC content

  • @ref: 21946
  • GC-content: 73
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21946

culture collection no.: DSM 42136, NBRC 110082, JCM 10101

straininfo link

  • @ref: 89220
  • straininfo: 402550

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25491896Streptomyces lactacystinicus sp. nov. and Streptomyces cyslabdanicus sp. nov., producing lactacystin and cyslabdan, respectively.Take A, Matsumoto A, Omura S, Takahashi YJ Antibiot (Tokyo)10.1038/ja.2014.1622014Acetylcysteine/*analogs & derivatives/metabolism, Anti-Bacterial Agents/*metabolism, DNA, Bacterial/genetics, Diterpenes/*metabolism, Gene Expression Regulation, Bacterial/physiology, Phylogeny, Species Specificity, Streptomyces/*classification/*metabolism/ultrastructureMetabolism
Phylogeny26612144Streptomyces lactacystinicus sp. nov. and Streptomyces cyslabdanicus sp. nov., producing lactacystin and cyslabdan, respectively.Take A, Matsumoto A, Omura S, Takahashi YJ Antibiot (Tokyo)10.1038/ja.2015.892015
Phylogeny36425437Screening, isolation and mechanism of a nematicidal extract from actinomycetes against the pine wood nematode Bursaphelenchus xylophilus.Shen J, Zhang C, Zhang S, Chen F, Pei F, Zhou S, Lin HHeliyon10.1016/j.heliyon.2022.e117132022

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21946Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42136Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42136)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89220Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402550.1