Strain identifier

BacDive ID: 130710

Type strain: Yes

Species: Streptococcus oriloxodontae

Strain history: N. Kuwahara NUM 2101 <-- M. Hirasawa.

NCBI tax ID(s): 1346684 (species)

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General

@ref: 21943

BacDive-ID: 130710

DSM-Number: 27377

keywords: 16S sequence, Bacteria, microaerophile, mesophilic

description: Streptococcus oriloxodontae DSM 27377 is a microaerophile, mesophilic bacterium that was isolated from elephant oral cavity.

NCBI tax id

  • NCBI tax id: 1346684
  • Matching level: species

strain history

@refhistory
21943<- N. Kuwahara, Nihon Univ., School of Dentistry, Matsudo; NUM 2101 <- M. Hirasawa
67770N. Kuwahara NUM 2101 <-- M. Hirasawa.

doi: 10.13145/bacdive130710.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus oriloxodontae
  • full scientific name: Streptococcus oriloxodontae Shinozaki-Kuwahara et al. 2014

@ref: 21943

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus oriloxodontae

full scientific name: Streptococcus oriloxodontae Shinozaki-Kuwahara et al. 2014

type strain: yes

Morphology

colony morphology

  • @ref: 21943
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21943COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
21943TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21943positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 21943
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol+builds acid from
6838130911sorbitol+builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
21943catalase-1.11.1.6
21943cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
21943-+--+/---++++++---++-------+--+---

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
21943elephant oral cavityJapanJPNAsia
67770Elephant oral cavity

isolation source categories

Cat1Cat2
#Host#Mammals
#Host Body-Site#Oral cavity and airways

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
21943Streptococcus oriloxodontae gene for 16S ribosomal RNA, partial sequenceAB8273271550ena1346684
67770Streptococcus oriloxodontae JCM 19285 gene for 16S rRNA, partial sequenceLC5892161493ena1346684

GC content

  • @ref: 21943
  • GC-content: 37.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21943

culture collection no.: DSM 27377, JCM 19285, NUM 2101

straininfo link

  • @ref: 89217
  • straininfo: 400624

literature

  • topic: Phylogeny
  • Pubmed-ID: 25139416
  • title: Streptococcus oriloxodontae sp. nov., isolated from the oral cavities of elephants.
  • authors: Shinozaki-Kuwahara N, Saito M, Hirasawa M, Takada K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.064048-0
  • year: 2014
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Elephants/*microbiology, Genes, Bacterial, Genotype, Molecular Sequence Data, Mouth/*microbiology, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcus/*classification/genetics/isolation & purification
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21943Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27377Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27377)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68381Automatically annotated from API rID32STR
89217Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400624.1