Strain identifier

BacDive ID: 130709

Type strain: Yes

Species: Streptococcus saliviloxodontae

Strain history: M. Saito and M. Hirasawa; Nihon Univ. Sch. of Dent. at Matsudo, Japan; NUM 6306.

NCBI tax ID(s): 1349416 (species)

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General

@ref: 21942

BacDive-ID: 130709

DSM-Number: 27513

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Streptococcus saliviloxodontae CCUG 70866 is a microaerophile, mesophilic bacterium that was isolated from elephant oral cavity.

NCBI tax id

  • NCBI tax id: 1349416
  • Matching level: species

strain history

@refhistory
21942<- M. Saito, Nihon Univ., School of Dentistry, Matsudo; NUM 6306 <- M. Hirasawa
67770M. Saito and M. Hirasawa; Nihon Univ. Sch. of Dent. at Matsudo, Japan; NUM 6306.

doi: 10.13145/bacdive130709.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus saliviloxodontae
  • full scientific name: Streptococcus saliviloxodontae Saito et al. 2014

@ref: 21942

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus saliviloxodontae

full scientific name: Streptococcus saliviloxodontae Saito et al. 2014

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no97.855
69480100positive

colony morphology

  • @ref: 21942
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21942COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
21942TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21942positivegrowth37mesophilic
63758positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
21942microaerophile
63758microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.996

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose+builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate+hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea+hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
21942catalase-1.11.1.6
21942cytochrome-c oxidase-1.9.3.1
68381urease+3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
21942-+---+----+++---++----+-++-----+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21942elephant oral cavityIchihara Elephant Kingdom, ChibaJapanJPNAsia
63758Saliva,African elephant
67770Elephant oral cavities

isolation source categories

Cat1Cat2
#Host#Mammals
#Host Body-Site#Oral cavity and airways

Safety information

risk assessment

  • @ref: 21942
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
21942Streptococcus saliviloxodontae gene for 16S ribosomal RNA, partial sequenceAB8283271504ena1349416
67770Streptococcus saliviloxodontae JCM 19288 gene for 16S rRNA, partial sequenceLC5892181488ena1349416

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus saliviloxodontae DSM 27513GCA_016908655contigncbi1349416
66792Streptococcus saliviloxodontae strain DSM 275131349416.3wgspatric1349416
66792Streptococcus saliviloxodontae DSM 275132901177780draftimg1349416

GC content

  • @ref: 21942
  • GC-content: 37.7
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno95.591no
gram-positiveyes92.986no
anaerobicno94.591yes
halophileyes72.144no
spore-formingno94.919no
thermophileno99.586yes
glucose-utilyes86.255no
aerobicno96.836yes
flagellatedno95.519no
glucose-fermentyes82.596no

External links

@ref: 21942

culture collection no.: CCUG 70866, DSM 27513, JCM 19288, NUM 6306

straininfo link

  • @ref: 89216
  • straininfo: 398260

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24994777Streptococcus loxodontisalivarius sp. nov. and Streptococcus saliviloxodontae sp. nov., isolated from oral cavities of elephants.Saito M, Shinozaki-Kuwahara N, Hirasawa M, Takada KInt J Syst Evol Microbiol10.1099/ijs.0.063263-02014Animals, Bacterial Typing Techniques, Base Composition, Chaperonin 60/genetics, DNA, Bacterial/genetics, Elephants/*microbiology, Genes, Bacterial, Molecular Sequence Data, Mouth/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcus/*classification/genetics/isolation & purificationGenetics
Phylogeny27381035Streptococcusdentiloxodontae sp. nov., isolated from the oral cavity of elephants.Shinozaki-Kuwahara N, Saito M, Hirasawa M, Hirasawa M, Takada KInt J Syst Evol Microbiol10.1099/ijsem.0.0012802016Animals, Bacterial Typing Techniques, Base Composition, Chaperonin 60/genetics, DNA, Bacterial/genetics, Elephants/*microbiology, Genes, Bacterial, Mouth/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcus/*classification/genetics/isolation & purificationTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21942Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27513Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27513)
63758Curators of the CCUGhttps://www.ccug.se/strain?id=70866Culture Collection University of Gothenburg (CCUG) (CCUG 70866)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89216Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398260.1