Strain identifier
BacDive ID: 130657
Type strain: 
Species: Thalassospira sp.
Strain Designation: GB04J01
Strain history: <- B. Altermark, Univ. Tromsø, Dept. of Chemistry, Norway; GB04J01
NCBI tax ID(s): 1912094 (species)
version 8.1 (current version)
General
@ref: 21836
BacDive-ID: 130657
DSM-Number: 28654
keywords: genome sequence, Bacteria, psychrophilic
description: Thalassospira sp. GB04J01 is a psychrophilic bacterium of the family Thalassospiraceae.
NCBI tax id
- NCBI tax id: 1912094
- Matching level: species
strain history
- @ref: 21836
- history: <- B. Altermark, Univ. Tromsø, Dept. of Chemistry, Norway; GB04J01
doi: 10.13145/bacdive130657.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Thalassospiraceae
- genus: Thalassospira
- species: Thalassospira sp.
- full scientific name: Thalassospira López-López et al. 2002
@ref: 21836
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Thalassospiraceae
genus: Thalassospira
species: Thalassospira sp.
full scientific name: Thalassospira sp.
strain designation: GB04J01
type strain: no
Culture and growth conditions
culture medium
- @ref: 21836
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 21836
- growth: positive
- type: growth
- temperature: 15
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 21836
- geographic location: Vestfjorden
- country: Norway
- origin.country: NOR
- continent: Europe
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thalassospira sp. GB04J01 | GCA_000751115 | contig | ncbi | 1485225 |
| 66792 | Thalassospira sp. GB04J01 | 1485225.4 | wgs | patric | 1485225 |
| 66792 | Thalassospira sp. GB04J01 | 2775506934 | draft | img | 1485225 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 94.956 | no |
| gram-positive | no | 98.975 | no |
| anaerobic | no | 97.949 | no |
| aerobic | yes | 79.247 | no |
| halophile | no | 50 | no |
| spore-forming | no | 94.506 | no |
| glucose-util | yes | 91.943 | no |
| flagellated | yes | 85.938 | no |
| thermophile | no | 98.736 | yes |
| glucose-ferment | no | 84.97 | no |
External links
@ref: 21836
culture collection no.: DSM 28654
straininfo link
- @ref: 89168
- straininfo: 407079
literature
- topic: Metabolism
- Pubmed-ID: 27016194
- title: Biochemical characterization and structural analysis of a new cold-active and salt-tolerant esterase from the marine bacterium Thalassospira sp.
- authors: De Santi C, Leiros HK, Di Scala A, de Pascale D, Altermark B, Willassen NP
- journal: Extremophiles
- DOI: 10.1007/s00792-016-0824-z
- year: 2016
- mesh: Bacterial Proteins/chemistry/*metabolism, Catalytic Domain, *Cold Temperature, Esterases/chemistry/*metabolism, Rhodospirillaceae/*enzymology, *Salt Tolerance
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21836 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28654 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28654) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89168 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407079.1 |