Strain identifier
BacDive ID: 130636
Type strain: 
Species: Ponticoccus gilvus
Strain Designation: MSW-19
Strain history: <- S. D. Lee, Cheju National University; MSW-19
NCBI tax ID(s): 2016499 (species)
version 8.1 (current version)
General
@ref: 22065
BacDive-ID: 130636
DSM-Number: 21351
keywords: genome sequence, mesophilic
description: Ponticoccus gilvus MSW-19 is a mesophilic prokaryote that was isolated from seawater.
NCBI tax id
- NCBI tax id: 2016499
- Matching level: species
strain history
- @ref: 22065
- history: <- S. D. Lee, Cheju National University; MSW-19
doi: 10.13145/bacdive130636.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Ponticoccus
- species: Ponticoccus gilvus
- full scientific name: Ponticoccus gilvus Lee and Lee 2008
@ref: 22065
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Ponticoccus
species: Ponticoccus gilvus
full scientific name: Ponticoccus gilvus Lee and Lee 2008
strain designation: MSW-19
type strain: no
Culture and growth conditions
culture medium
- @ref: 22065
- name: RICH MEDIUM (DSMZ Medium 736)
- growth: yes
- link: https://mediadive.dsmz.de/medium/736
- composition: Name: RICH MEDIUM (DSMZ Medium 736) Composition: Agar 20.0 g/l Bacto peptone 10.0 g/l Yeast extract 5.0 g/l Malt extract 5.0 g/l Casamino acids 5.0 g/l Glycerol 2.0 g/l Meat extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Tween 80 0.05 g/l Distilled water
culture temp
- @ref: 22065
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22065
- sample type: seawater
- geographic location: Jeju, Mara Island
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ponticoccus gilvus strain DSM 21351 | 519423.3 | wgs | patric | 519423 |
| 66792 | Ponticoccus gilvus DSM 21351 | 2756170315 | draft | img | 519423 |
| 66792 | Enemella evansiae DSM 21351 | GCA_004362375 | scaffold | ncbi | 2016499 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | yes | 86.611 | no |
| anaerobic | no | 99.248 | no |
| halophile | no | 81.869 | no |
| spore-forming | no | 70.15 | no |
| glucose-util | yes | 86.008 | no |
| aerobic | yes | 88.735 | no |
| thermophile | no | 98.932 | no |
| motile | no | 94.646 | no |
| flagellated | no | 98.756 | no |
| glucose-ferment | no | 80.437 | no |
External links
@ref: 22065
culture collection no.: DSM 21351, KCTC 19476
literature
- topic: Phylogeny
- Pubmed-ID: 18974950
- title: Ponticoccus gilvus gen. nov., sp. nov., a novel member of the family Propionibacteriaceae from seawater.
- authors: Lee DW, Lee SD
- journal: J Microbiol
- DOI: 10.1007/s12275-008-0096-0
- year: 2008
- mesh: DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Korea, Molecular Sequence Data, Phylogeny, Propionibacteriaceae/chemistry/*classification/genetics/*isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22065 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21351 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21351) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |