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Strain identifier

BacDive ID: 130635

Type strain: Yes

Species: Ruegeria mediterranea

Strain Designation: M17

Strain history: <- CECT <- M. J. Pujalte, Univ. Valencia, Campus Burjasot, Spain; M17

NCBI tax ID(s): 1280832 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22058

BacDive-ID: 130635

DSM-Number: 29946

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Ruegeria mediterranea M17 is a mesophilic bacterium that was isolated from surface seawater.

NCBI tax id

  • NCBI tax id: 1280832
  • Matching level: species

strain history: <- CECT <- M. J. Pujalte, Univ. Valencia, Campus Burjasot, Spain; M17

doi: 10.13145/bacdive130635.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Ruegeria
  • species: Ruegeria mediterranea
  • full scientific name: Ruegeria mediterranea (Lucena et al. 2014) Wirth and Whitman 2018
  • synonyms

    @refsynonym
    20215Falsiruegeria mediterranea
    20215Tropicibacter mediterraneus

@ref: 22058

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Ruegeria

species: Ruegeria mediterranea

full scientific name: Ruegeria mediterranea (Lucena et al. 2014) Wirth and Whitman 2018

strain designation: M17

type strain: yes

Morphology

colony morphology

  • @ref: 22058
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 22058
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 22058
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
22058catalase+1.11.1.6
22058cytochrome-c oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
22058-------+/-------------

Isolation, sampling and environmental information

isolation

  • @ref: 22058
  • sample type: surface seawater
  • geographic location: Valencia, Malvarrosa Beach
  • country: Spain
  • origin.country: ESP
  • continent: Europe
  • latitude: 39.4747
  • longitude: -0.3231

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

Safety information

risk assessment

  • @ref: 22058
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22058
  • description: Tropicibacter mediterraneus M17 partial 16S rRNA gene, type strain M17T
  • accession: HE860710
  • length: 1419
  • database: ena
  • NCBI tax ID: 1200281

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ruegeria mediterranea M17 CECT 7615GCA_900302455contigncbi1200281
66792Tropicibacter mediterraneus M15O_3 strain CECT 76151281900.4wgspatric1281900
66792Ruegeria mediterranea CECT 76152840899269draftimg1280832

External links

@ref: 22058

culture collection no.: DSM 29946, CECT 7615, KCTC 23058

straininfo link

@refpassport
20218http://www.straininfo.net/strains/893176
20218http://www.straininfo.net/strains/893177

literature

  • topic: Phylogeny
  • Pubmed-ID: 23706913
  • title: Description of Tropicibacter mediterraneus sp. nov. and Tropicibacter litoreus sp. nov.
  • authors: Lucena T, Ruvira MA, Macian MC, Pujalte MJ, Arahal DR
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2013.04.001
  • year: 2013
  • mesh: Animals, Bacterial Proteins/analysis, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Ostreidae/microbiology, Phylogeny, Proteome/analysis, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/chemistry/*classification/genetics/*isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Spain, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
22058Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29946Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29946)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE