Strain identifier
BacDive ID: 130595
Type strain: 
Species: Rhizobium sp.
Strain Designation: TCK
Strain history: <- P. Roy, Dept. Microbiol., Bose Inst., India; TCK
NCBI tax ID(s): 391 (species)
version 8.1 (current version)
General
@ref: 21927
BacDive-ID: 130595
DSM-Number: 13828
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Rhizobium sp. TCK is a mesophilic, Gram-negative bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 391
- Matching level: species
strain history
- @ref: 21927
- history: <- P. Roy, Dept. Microbiol., Bose Inst., India; TCK
doi: 10.13145/bacdive130595.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium sp.
- full scientific name: Rhizobium Frank 1889 (Approved Lists 1980)
synonyms
@ref synonym 20215 Heterorhizobium 20215 Paenirhizobium 20215 Alirhizobium 20215 Peteryoungia
@ref: 21927
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium sp.
full scientific name: Rhizobium sp.
strain designation: TCK
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.989
Culture and growth conditions
culture medium
- @ref: 21927
- name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
- growth: yes
- link: https://mediadive.dsmz.de/medium/381
- composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
- @ref: 21927
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
- @ref: 21927
- sample type: Soil
- geographic location: West Bengal
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhizobium sp. TCK | GCA_902502775 | complete | ncbi | 136098 |
| 66792 | Rhizobium sp. TCK | 136098.3 | complete | patric | 136098 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 58.006 | no |
| flagellated | no | 58.006 | no |
| gram-positive | no | 98.374 | no |
| gram-positive | no | 98.374 | no |
| anaerobic | no | 95.107 | no |
| anaerobic | no | 95.107 | no |
| aerobic | yes | 90.65 | no |
| aerobic | yes | 90.65 | no |
| halophile | no | 76.304 | no |
| halophile | no | 76.304 | no |
| spore-forming | no | 95.649 | no |
| spore-forming | no | 95.649 | no |
| thermophile | no | 98.142 | yes |
| thermophile | no | 98.142 | yes |
| glucose-util | yes | 86.985 | no |
| glucose-util | yes | 86.985 | no |
| motile | yes | 85.451 | no |
| motile | yes | 85.451 | no |
| glucose-ferment | no | 91.767 | no |
| glucose-ferment | no | 91.767 | no |
External links
@ref: 21927
culture collection no.: DSM 13828
straininfo link
- @ref: 89110
- straininfo: 405379
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21927 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13828 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13828) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89110 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405379.1 |