Strain identifier
BacDive ID: 130547
Type strain: 
Species: Pseudomonas aeruginosa
Strain Designation: PA32
Strain history: <- Marina Goderdzishvili, Eliava Institute of Bacteriophages, Microbiology and Virology, Tbilisi, Georgia
NCBI tax ID(s): 287 (species)
version 8.1 (current version)
General
@ref: 21998
BacDive-ID: 130547
DSM-Number: 25641
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Pseudomonas aeruginosa PA32 is a mesophilic human pathogen that was isolated from Patient.
NCBI tax id
- NCBI tax id: 287
- Matching level: species
strain history
- @ref: 21998
- history: <- Marina Goderdzishvili, Eliava Institute of Bacteriophages, Microbiology and Virology, Tbilisi, Georgia
doi: 10.13145/bacdive130547.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas aeruginosa
- full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium aeruginosum
@ref: 21998
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas aeruginosa
full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900
strain designation: PA32
type strain: no
Culture and growth conditions
culture medium
- @ref: 21998
- name: BHI MEDIUM (DSMZ Medium 215)
- growth: yes
- link: https://mediadive.dsmz.de/medium/215
- composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
culture temp
- @ref: 21998
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | + | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | + | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | + | hydrolysis |
| 68369 | 29016 | arginine | + | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | + | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | + | 3.5.1.5 |
| 68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21998 | + | - | - | + | + | - | + | - | + | + | + | + | + | - | + | + | + | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 21998
- sample type: Patient
- country: Georgia
- origin.country: GEO
- continent: Asia
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Infection | #Patient |
| #Host | #Human |
Safety information
risk assessment
- @ref: 21998
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Pseudomonas aeruginosa PA32
- accession: GCA_003332735
- assembly level: contig
- database: ncbi
- NCBI tax ID: 287
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 87.717 | no |
| flagellated | yes | 85.09 | no |
| gram-positive | no | 98.454 | no |
| anaerobic | no | 98.579 | no |
| aerobic | yes | 93.116 | no |
| halophile | no | 91.87 | no |
| spore-forming | no | 92.298 | no |
| glucose-util | yes | 90.192 | no |
| thermophile | no | 99.861 | yes |
| glucose-ferment | no | 90.489 | no |
External links
@ref: 21998
culture collection no.: DSM 25641
straininfo link
- @ref: 89068
- straininfo: 401921
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21998 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25641 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25641) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68369 | Automatically annotated from API 20NE | |||
| 89068 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401921.1 |