Strain identifier
BacDive ID: 130545
Type strain: 
Species: Acidipropionibacterium damnosum
Strain Designation: IGBL13
Strain history: <- A. Maldonado, CSIC, Instituto de la Grasa; IGBL13 <- H. L. Padrós
NCBI tax ID(s): 1243001 (species)
version 8.1 (current version)
General
@ref: 21734
BacDive-ID: 130545
DSM-Number: 25450
keywords: 16S sequence, Bacteria, microaerophile, mesophilic
description: Acidipropionibacterium damnosum IGBL13 is a microaerophile, mesophilic bacterium that was isolated from spoiled packaged Spanish-style green olives.
NCBI tax id
- NCBI tax id: 1243001
- Matching level: species
strain history
- @ref: 21734
- history: <- A. Maldonado, CSIC, Instituto de la Grasa; IGBL13 <- H. L. Padrós
doi: 10.13145/bacdive130545.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Acidipropionibacterium
- species: Acidipropionibacterium damnosum
- full scientific name: Acidipropionibacterium damnosum (Lucena-Padrós et al. 2014) Scholz and Kilian 2016
synonyms
- @ref: 20215
- synonym: Propionibacterium damnosum
@ref: 21734
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Propionibacteriaceae
genus: Acidipropionibacterium
species: Acidipropionibacterium damnosum
full scientific name: Acidipropionibacterium damnosum (Lucena-Padrós et al. 2014) Scholz and Kilian 2016
strain designation: IGBL13
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21734
- name: BHI MEDIUM (DSMZ Medium 215)
- growth: yes
- link: https://mediadive.dsmz.de/medium/215
- composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
culture temp
- @ref: 21734
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 21734
- oxygen tolerance: microaerophile
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68380 | 16199 | urea | - | hydrolysis |
| 68380 | 29016 | arginine | - | hydrolysis |
| 68380 | 16024 | D-mannose | + | fermentation |
| 68380 | 16634 | raffinose | - | fermentation |
| 68380 | 29985 | L-glutamate | - | degradation |
| 68380 | 17632 | nitrate | - | reduction |
| 68380 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68380 | glutamyl-glutamate arylamidase | - | |
| 68380 | glycin arylamidase | - | |
| 68380 | alanine arylamidase | - | 3.4.11.2 |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68380 | leucyl glycin arylamidase | - | 3.4.11.1 |
| 68380 | alkaline phosphatase | + | 3.1.3.1 |
| 68380 | tryptophan deaminase | - | 4.1.99.1 |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68380 | beta-glucuronidase | - | 3.2.1.31 |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 |
| 68380 | beta-Galactosidase 6-phosphate | - | |
| 68380 | arginine dihydrolase | - | 3.5.3.6 |
| 68380 | urease | - | 3.5.1.5 |
API rID32A
| @ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA | NIT | IND |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21734 | - | - | +/- | +/- | - | +/- | +/- | - | - | - | + | - | - | +/- | + | + | + | - | +/- | + | - | +/- | - | - | +/- | - | +/- | ||
| 21734 | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 21734
- sample type: spoiled packaged Spanish-style green olives
- geographic location: Sevilla
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Bottled, canned, packed food |
| #Environmental | #Microbial community | |
| #Host Body-Site | #Plant | #Fruit (Seed) |
Safety information
risk assessment
- @ref: 21734
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21734
- description: Propionibacterium damnosum strain IGBL13 16S ribosomal RNA gene, partial sequence
- accession: JQ283461
- length: 1380
- database: ena
- NCBI tax ID: 1243001
GC content
- @ref: 21734
- GC-content: 67.5
- method: fluorimetric
External links
@ref: 21734
culture collection no.: DSM 25450, CECT 8062
straininfo link
- @ref: 89066
- straininfo: 394471
literature
- topic: Phylogeny
- Pubmed-ID: 24912823
- title: Propionibacterium olivae sp. nov. and Propionibacterium damnosum sp. nov., isolated from spoiled packaged Spanish-style green olives.
- authors: Lucena-Padros H, Gonzalez JM, Caballero-Guerrero B, Ruiz-Barba JL, Maldonado-Barragan A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.063032-0
- year: 2014
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Fermentation, *Food Microbiology, Fruit/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Olea/*microbiology, *Phylogeny, Propionibacterium/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNA, Spain
- topic2: Biotechnology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21734 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25450 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25450) | |
| 68380 | Automatically annotated from API rID32A | |||
| 89066 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID394471.1 |