General

@ref: 21696

BacDive-ID: 130493

DSM-Number: 27136

keywords: 16S sequence, Bacteria, mesophilic

description: Nocardioides daecheongensis KIS2-16 is a mesophilic bacterium that was isolated from forest soil.

NCBI tax id

• NCBI tax id: 1469601
• Matching level: species

strain history

• @ref: 21696
• history: <- S.-W. Kwon, KACC; KIS2-16

doi: 10.13145/bacdive130493.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/actinomycetota
• domain: Bacteria
• phylum: Actinomycetota
• class: Actinomycetes
• order: Propionibacteriales
• family: Nocardioidaceae
• genus: Nocardioides
• species: Nocardioides daecheongensis
• full scientific name: Nocardioides daecheongensis Lim et al. 2014

@ref: 21696

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardioidaceae

genus: Nocardioides

species: Nocardioides daecheongensis

full scientific name: Nocardioides daecheongensis Lim et al. 2014

strain designation: KIS2-16

type strain: yes

Culture and growth conditions

culture medium

• @ref: 21696
• name: R2A MEDIUM (DSMZ Medium 830)
• growth: yes
• link: https://mediadive.dsmz.de/medium/830
• composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

• @ref: 21696
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 21696
• sample type: forest soil
• geographic location: Daecheong Island of Incheon region
• country: Republic of Korea
• origin.country: KOR
• continent: Asia

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_64354.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_4676;97_5668;98_45493;99_64354&stattab=map
• Last taxonomy: Nocardioides daecheongensis subclade
• 16S sequence: KJ135310
• Sequence Identity:
• Total samples: 16
• soil counts: 9
• aquatic counts: 1
• animal counts: 3
• plant counts: 3

Safety information

risk assessment

• @ref: 21696
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 21696
• description: Nocardioides daecheongensis strain KIS2-16 16S ribosomal RNA gene, partial sequence
• accession: KJ135310
• length: 1450
• database: ena
• NCBI tax ID: 1469601

GC content

• @ref: 21696
• GC-content: 64.9
• method: fluorimetric

External links

@ref: 21696

culture collection no.: DSM 27136, KACC 17297, NBRC 109597

straininfo link

• @ref: 89017
• straininfo: 399879

literature

• topic: Phylogeny
• Pubmed-ID: 25249564
• title: Nocardioides daecheongensis sp. nov., isolated from soil.
• authors: Lim JM, Kim SJ, Hamada M, Ahn JH, Weon HY, Suzuki KI, Ahn TY, Kwon SW
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.063610-0
• year: 2014
• mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Forests, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
• topic2: Genetics

Reference