Strain identifier

BacDive ID: 130475

Type strain: Yes

Species: Nocardia casuarinae

Strain history: <- M. Gtari, University of Tunis; BMG 51109a

NCBI tax ID(s): 1463564 (species)

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General

@ref: 21693

BacDive-ID: 130475

DSM-Number: 45978

keywords: 16S sequence, Bacteria, mesophilic

description: Nocardia casuarinae DSM 45978 is a mesophilic bacterium that was isolated from surface-sterilized root nodules of Casuarina glauca .

NCBI tax id

  • NCBI tax id: 1463564
  • Matching level: species

strain history

  • @ref: 21693
  • history: <- M. Gtari, University of Tunis; BMG 51109a

doi: 10.13145/bacdive130475.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia casuarinae
  • full scientific name: Nocardia casuarinae Ghodhbane-Gtari et al. 2015

@ref: 21693

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Nocardia

species: Nocardia casuarinae

full scientific name: Nocardia casuarinae Ghodhbane-Gtari et al. 2015

type strain: yes

Morphology

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_45978_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_45978_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_45978_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_45978_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_45978_5.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_45978_6.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_45978_7.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 21693
  • name: GPHF-MEDIUM (DSMZ Medium 553)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/553
  • composition: Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

culture temp

  • @ref: 21693
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 21693
  • sample type: surface-sterilized root nodules of Casuarina glauca (filao)
  • host species: Casuarina glauca
  • geographic location: Sejnane (Bizerte), Zerniza arboreatum
  • country: Tunisia
  • origin.country: TUN
  • continent: Africa
  • latitude: 37.15
  • longitude: 9.1167

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Root nodule
#Host Body-Site#Plant#Sterilized plant part

taxonmaps

  • @ref: 69479
  • File name: preview.99_147251.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_623;97_726;98_845;99_147251&stattab=map
  • Last taxonomy: Nocardia
  • 16S sequence: KF924767
  • Sequence Identity:
  • Total samples: 133
  • soil counts: 91
  • aquatic counts: 23
  • animal counts: 13
  • plant counts: 6

Safety information

risk assessment

  • @ref: 21693
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21693
  • description: Nocardia casuarinae strain BMG51109a 16S ribosomal RNA gene, partial sequence
  • accession: KF924767
  • length: 1500
  • database: ena
  • NCBI tax ID: 1463564

External links

@ref: 21693

culture collection no.: DSM 45978, CECT 8469, BMG 51109a

straininfo link

  • @ref: 89004
  • straininfo: 407458

literature

  • topic: Phylogeny
  • Pubmed-ID: 24715251
  • title: Nocardia casuarinae sp. nov., an actinobacterial endophyte isolated from root nodules of Casuarina glauca.
  • authors: Ghodhbane-Gtari F, Nouioui I, Salem K, Ktari A, Montero-Calasanz Mdel C, Tisa LS, Klenk HP, Gtari M
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-014-0168-6
  • year: 2014
  • mesh: Bacterial Typing Techniques, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Endophytes/chemistry/*classification/genetics/*isolation & purification, Fatty Acids/analysis, Glycolipids/analysis, Microscopy, Molecular Sequence Data, Nocardia/chemistry/*classification/genetics/*isolation & purification, Phospholipids/analysis, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tracheophyta/*microbiology, Tunisia
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21693Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45978Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45978)
66793Mukherjee et al.GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life10.1038/nbt.3886 35: 676-683 201728604660
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89004Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407458.1