Strain identifier

BacDive ID: 130465

Type strain: Yes

Species: Mycobacterium paraense

Strain Designation: 1392, IEC26

Strain history: CCUG 66121 <-- E. Tortoli; IRCCS San Raffaele Sci. Inst., Italy; IEC26 <-- A. R. Fusco da Costa; Evandro Chagas Inst., Brazil.

NCBI tax ID(s): 767916 (species)

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General

@ref: 21683

BacDive-ID: 130465

DSM-Number: 46749

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Mycobacterium paraense 1392 is a microaerophile, mesophilic bacterium that was isolated from clinical pulmonary specimen.

NCBI tax id

  • NCBI tax id: 767916
  • Matching level: species

strain history

@refhistory
21683<- E. Tortoli, Milano,Italy; IEC26 <- A. R. Fusco da Costa
67770CCUG 66121 <-- E. Tortoli; IRCCS San Raffaele Sci. Inst., Italy; IEC26 <-- A. R. Fusco da Costa; Evandro Chagas Inst., Brazil.

doi: 10.13145/bacdive130465.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium paraense
  • full scientific name: Mycobacterium paraense Fusco da Costa et al. 2015

@ref: 21683

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium paraense

full scientific name: Mycobacterium paraense Fusco da Costa et al. 2015 emend. Nouioui et al. 2018

strain designation: 1392, IEC26

type strain: yes

Morphology

colony morphology

  • @ref: 63287
  • incubation period: 5-7 days

multimedia

@refmultimedia contentintellectual property rightscaption
21683https://www.dsmz.de/microorganisms/photos/DSM_46749-1.jpg© Leibniz-Institut DSMZ
21683https://www.dsmz.de/microorganisms/photos/DSM_46749.jpg© Leibniz-Institut DSMZMedium 645 37°C

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63287
  • oxygen tolerance: microaerophile

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21683clinical pulmonary specimenPara, ParauapebasBrazilBRAMiddle and South America
63287Human respiratory sampleState of ParaBrazilBRAMiddle and South America
67770Sputum of a patientParauapebas, ParáBrazilBRAMiddle and South America

isolation source categories

Cat1Cat2Cat3
#Infection#Medical environment#Clinic
#Infection#Patient#Specimen
#Host Body-Site#Oral cavity and airways#Lung

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
21683Mycobacterium paraense strain IEC26 16S ribosomal RNA gene, partial sequenceHM056103501ena767916
21683Mycobacterium paraense strain IEC26 16S ribosomal RNA gene, complete sequenceKJ9489961480ena767916

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium paraense IEC262865407219draftimg767916
67770Mycobacterium paraense IEC26GCA_002101815contigncbi767916
66792Mycobacterium paraense DSM 46749GCA_025823385contigncbi767916

GC content

  • @ref: 67770
  • GC-content: 69.3
  • method: genome sequence analysis

External links

@ref: 21683

culture collection no.: DSM 46749, CCUG 66121, JCM 32218

straininfo link

  • @ref: 88994
  • straininfo: 408599

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25487637Characterization of 17 strains belonging to the Mycobacterium simiae complex and description of Mycobacterium paraense sp. nov.Fusco da Costa AR, Fedrizzi T, Lopes ML, Pecorari M, Oliveira da Costa WL, Giacobazzi E, da Costa Bahia JR, De Sanctis V, Batista Lima KV, Bertorelli R, Grottola A, Fabio A, Mariottini A, Ferretti P, Di Leva F, Fregni Serpini G, Tagliazucchi S, Rumpianesi F, Jousson O, Segata N, Tortoli EInt J Syst Evol Microbiol10.1099/ijs.0.068395-02014Bacterial Typing Techniques, Brazil, DNA, Bacterial/genetics, Genes, Bacterial, Humans, Italy, Molecular Sequence Data, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/*microbiology, Mycolic Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sputum/microbiologyPathogenicity
Phylogeny28869002Mycobacterium eburneum sp. nov., a non-chromogenic, fast-growing strain isolated from sputum.Nouioui I, Carro L, Teramoto K, Igual JM, Jando M, Del Carmen Montero-Calasanz M, Sutcliffe I, Sangal V, Goodfellow M, Klenk HPInt J Syst Evol Microbiol10.1099/ijsem.0.0020332017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Humans, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sputum/*microbiology, SwitzerlandPathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21683Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46749Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46749)
63287Curators of the CCUGhttps://www.ccug.se/strain?id=66121Culture Collection University of Gothenburg (CCUG) (CCUG 66121)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
88994Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408599.1